abhigna polavarapu wrote:



Hi Mark,
I need to calculate the individual energies of aminoacids using Gromacs. But while using energygrps option in .mdp file for each amino acid I can only calculated the nonbonded energies of this residue. Is there a way where I can calculated the bonded interactions for each amino acid?

I answered this already. http://www.gromacs.org/pipermail/gmx-users/2007-June/027899.html Please don't re-post identical questions.

Mark
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