Hello all,
A recent simulation has been running on a cluster for a couple of weeks.  
5.something-ns in it crashed due to a hardware glitch.  All perfectly 
understandable so far.
The strange thing is, using tpbconv now results in a .tpr that crashes in the 
first step due to massive LINCS errors.  Even if you use the option -time to 
take the simulation way back, to say 0.5ns when it ought to still be fine, it 
still crashes.  Other simulations on the same hardware+software are running 
fine, other restarts from other jobs crashing at the same time have worked 
fine, so it doesn't look like a bug.  Any suggestions as to why LINCS errors 
could suddenly now prevent the simulation from running *any* of the steps that 
it previously ran just fine?  I just want a hint as to what we could have 
missed, really.

Alan Dodd
UoB


 
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