Hi again...

How can we tell? You haven't given us your command line, or a meaningful chunk of output.

my command:

g_dist -f traj.xtc -n index.ndx -s topol.tpr

The output:
---
Select a group: 0
Selected 0: 'DPPC'
Select a group: 1
Selected 1: 'AL'
Reading frame 0 time 0.000 Back Off! I just backed up dist.xvg to ./#dist.xvg.1# Reading frame 400 time 200.000
-and then it stops! I need to hit ctrl-c

dist.xvg ends:
216.0000153    3.7260792    2.1281288    1.1397107   -2.8382730
216.5000

I tried to convert the trajectory using trjconv -pbc, but non of the options seems to work.
I thought that it maybe would help. Someone else (who had send a message to this list Bug ? in PBC in g_dist, July 2006) had some problems with g_dist and tried to convert the trajectory.


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