root wrote:
Dear GROMACS user:
Erik and Tom thanks by the comments, too. Sorry, I read the FAQ pages of
http://folding.stanford.edu and now I understand your comments.
We tried with cpp = /lib/cpp -traditional in the mdp file. The warning
desapears, but the error messages is similar.
(Fatal error:
Atoms in the .top are not numbered consecutively from 1
-------------------------------------------------------
We tested the dick.top file, and we verified that the atoms
are numbered
consecutively from 1 to 758.)
Have you inspected the #included files as well? The way cpp works, any
file #included is literally dropped into its parent file, so if you had
something wrong in such an #inclusion you'd need to fix that.
Mark
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