When posting questions you need to give more information. "I prepared
dopc.itp parameter file for DOPC lipid bilayer." -- last thing I heard
you were talking about two very different parameter sets, so I get
confused. If you are going with the Berger parameters then for arbitrary
protein ff combinations I have previously posted a method. But be aware
that using an all atom protein with a united atom lipid model is not
standard and the fact that I use this combination and that I have posted
a method to a users-list doesn't in any way imply that it is the correct
approach.
Information about using oplsaa is here:
http://www.gromacs.org/pipermail/gmx-users/2006-September/023639.html
http://www.gromacs.org/pipermail/gmx-users/2006-May/021416.html
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