Hi,

Unfortunately that's exactly the one :-)

You can search the mailing list online for details, but there's a post from 20070323 where Chris Neale reported success after downgrading to cc (GCC) 3.3.6 (Ubuntu 1:3.3.6-13ubuntu2). No guarantees though, since he didn't seem to have exactly the same problem.

Cheers,

Erik


On Apr 23, 2007, at 5:42 PM, Daniel Rigden wrote:

Hi Erik

Thanks for the reply.  Yes, I get this

cc (GCC) 4.1.2 20060928 (prerelease) (Ubuntu 4.1.1-13ubuntu5)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is
NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.

Thanks

Daniel

On Mon, 2007-04-23 at 17:37 +0200, Erik Lindahl wrote:
Hi Daniel,

Could you run

cc --version

and post the result?  Apparently some new Linux distributions are
shipping with a buggy prerelease of gcc.

Cheers,

Erik

On Apr 23, 2007, at 5:21 PM, Daniel Rigden wrote:

Dear all

I'm trying to compile the latest GROMACS 3.3.1 on the latest Ubuntu
Linux.  Due to some fftw installation issue I used

./configure --with-fft=fftpack
make
make install

All seemed to work fine, but any program I try to run now gives me a
crash of this kind

[EMAIL PROTECTED]: g_clustsize
                         :-)  G  R  O  M  A  C  S  (-:

*** stack smashing detected ***: g_clustsize terminated
Aborted (core dumped)

Can anyone help?

Thanks

Daniel


--
Dr Daniel John Rigden                     Tel:(+44) 151 795 4467
School of Biological Sciences             FAX:(+44) 151 795 4406
Room 101, Biosciences Building
University of Liverpool
Crown St.,
Liverpool L69 7ZB, U.K.


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Dr Daniel John Rigden                     Tel:(+44) 151 795 4467
School of Biological Sciences             FAX:(+44) 151 795 4406
Room 101, Biosciences Building
University of Liverpool
Crown St.,
Liverpool L69 7ZB, U.K.


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