Alif M Latif wrote:
Dear GROMACS users,
I was wondering if GROMACS can run MD simulation of two molecules in one
system (box+spc water). This two molecules have the hydrophobic and
polarity effects which i want to see through the simulation. Can anybody
suggest how to do it? I cant find it in the manual (or maybe i missed
them). Any suggestion will be welcomed and very much appreciated. Thanks
a lot..
For a start, read chapters 1-5 and do the tutorial material available on
the website. If you've already done this, then you need to ask a more
focused question, or read chapter 5 more closely.
Mark
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