Stas Bobritsky wrote:
Hi all.
I`m trying to make short MD simulation in tRNA+water+ions(Na+) system.
But mdrun fails with Segmentaiont Fault. I can`t fix it, please help, if
it`s possible.
Gromacs version: 3.3.1
Forcefield: ffamber99p.
most likely a bad starting structure. try to minimize without water and
ions first, then add ions and water.
Stas Bobritsky, student.
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David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
[EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se
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