Qiang Zhong wrote:
Dear users:
     I have a protein complex,which is docking result that from cluspr 
server,The
complex maybe not perfect,So when I simulate it on gromacs ,many linus warning 
was
reported.
     Could somebody tell me how to handle this problem,how to pre-optimize the
complex,Thank you very much!

Have you tried following the methodologies in the tutorials?

Mark
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