Dear Gmx developers,
The gmx/tutor examples include some mdp options not documented in the
Gromacs 3.3 user manual, such as those in the following list. Are they
deprecated or new parameters? Can I find a full list of mdp options?
bd-temp
nstcheckpoint
domain-decomposition
gb_algorithm
nstgbradii
rgbradii
gb_saltconc
implicit_solvent
andersen_seed
Shake-SOR
dihre
dihre-fc
dihre-tau
nstdihreout
Thanks,
Sunny
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