Jones de Andrade wrote:
Hi Erik.
Well, I don't even use the [pairtypes] section in my files. Only use
the [pairs] one, in the way explained before. This means, so, that it
should not have any problem, and reduce "independently" the LJ
potentials by a factor of 0.5, and coulombic interations by a factor
of 0.8333, correct?
Thanks a lot for all the help. And hope these "files structure"
examples helps someone else in the future.
Thanks a lot.
Of course this only works for the 1-4 interactions, not the normal LJ
and Coulomb interactions. Please see discussion in the manual, chapter 4.
--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
[EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se
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