clark wrote: > Dear all: > I have some problems about how to construct PMF(Potential of Mean Force) > from the result of AFM pulling function in Gromacs.After the "pull.pdo" > file was obtained and the force was calculated using the scripts writen > by Prof. , How can I get the PMF from the result(coordinate and force)? > In theory, Should I have to perform several AFM pulling simulation from > different start points(conformation and velocity)?? > Thanks!I will appreciate it if some one would help me solve this problem?
How about reading some papers where they describe such simulations and constructions? Mark _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
