Reynier Suardiaz del Río wrote:
Hi, is my firt question in the list, i have a very simple and posibly a very nonsense question. do i have to use mdrun to performe a single point calculation of a certain conformation? how? is there something to specify in .mdp file?

Just do a zero step minimization.

Can some body provide me an example of how to use ffscan? with a small molecule if it is possible...

Not I.

By the way, leaping straight into force field modification before acquiring some experince with gromacs (and/or MD in general) seems to me an excessively masochistic thing to want to do.

Mark
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