Check your topology file against ffoplsaa.rtp and ffoplsaabon.itp

Yang Ye

singh wrote:

Dear Users,

I am trying to simulate a capped pentapeptide using OPLS force field. Pdb2gmx runs successfully , however grompp gives following warnings

WARNING 1 [file "topol.top", line 632]:

  No default Ryckaert-Bell. types, using zeroes

WARNING 2 [file "topol.top", line 857]:

  No default Ryckaert-Bell. types, using zeroes

How should I proceed if these parameters are missing in OPLS.

The topology and gro files are attached herewith

Regards,

Gurpreet

-------------------------------------------------

University of Dortmund
Department of Chemistry
Physical Chemistry I  -  Biophysical Chemistry
Otto-Hahn Str. 6
D-44227 Dortmund
Germany

Office:   C1-06 room 176
Phone:  +49 231 755 3916

-------------------------------------------------

------------------------------------------------------------------------

_______________________________________________
gmx-users mailing list    gmx-users@gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php



_______________________________________________
gmx-users mailing list    gmx-users@gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php

Reply via email to