Hi,
I'm hoping to utilize gromacs' analysis tools to analyse my Amber trajectories. Specifically, I'm interested in the clustering module.
I was wondering if pdb2gmx is able to convert Amber trajectories to gromacs ones such that the analysis tools (especially g_cluster can be used..
I'm aware of that the units in Gromacs is nm while that in Amber is Angstroms, would pdb2gmx take care of that or maybe that might not matter if I just want to do clustering?
Thanks!
Jamie
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