Dear all,
I am trying to run the dynamics of protein-ligand complex following the tutorial "GROMACS Tutorial for Drug_Enzyme Complex version 3.3.1" . I am running position restricted dynamics of the 91az8.pdb protein as mentioned in the tutorial trp.pdb & drg.pdb)in a Linux server machine, I can not understand why it is taking such a long time, the machine is not busy with any other jobs.I ran it before & I stopped the run at 1200 min, now it is going for about 215 min, & step6.pdb, step7.pdb etc files are being formed, I can not undersyand whether I am doing any wrong step, why it is taking such a long time , I don't know , please help. regards sangeeta Open WebMail Project (http://openwebmail.org) _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
