Hi,

2) Should I extract dv/dl values from my .edr file to get dG? Can I use dgdl.xvg
file? It is trivial but I am confused about this procedure.

dgdl.xvg contains instantaneous values from the timesteps it is writing. No more, no less.

If you have a noisy signal, it might be better to use the energy file in some cases, since the average value reported by g_energy is actually using data from every single step, even if you are only writing the energy file e.g. every 1000 steps.

Cheers,

Erik

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