Erik,
Thank you for your reply. It seems no other jobs are running in my
computer.
The following message is the result of top command:
PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND
18230 dong 20 19 10468 9m 1924 R 54.0 1.1 2380:49 mdrun_mpi
18231 dong 19 19 7964 7676 1660 R 46.0 0.8 2284:11 mdrun_mpi
1 root 8 0 468 436 436 S 0.0 0.0 0:00.11 init
2 root 9 0 0 0 0 S 0.0 0.0 0:00.01 keventd
3 root 19 19 0 0 0 S 0.0 0.0 0:00.00
ksoftirqd_CPU0
4 root 9 0 0 0 0 S 0.0 0.0 0:02.98 kswapd
5 root 9 0 0 0 0 S 0.0 0.0 0:00.00 bdflush
6 root 9 0 0 0 0 S 0.0 0.0 0:00.06 kupdated
My computer has two CPUs. Any other suggestion?
Dongsheng
On Tue, 2006-06-27 at 22:50 +0200, Erik Lindahl wrote:
> Hi,
>
> The serial version of mdrun defaults to nice 19, i.e. it only runs
> when nothing else wants the CPU. Check if something else is running!
>
> Cheers,
>
> Erik
>
> On Jun 27, 2006, at 8:12 PM, Dongsheng Zhang wrote:
>
> > Dear GMX users,
> >
> > I have run a simulation several days ago. It supposed to finish on
> > Sunday. However, the program seems stop in the middle. There is no
> > more
> > output. If I use command "top" to check the process, it shows the
> > program is still running. And there is no error message in the log
> > file
> > either. Could anyone tell me what's going on? Thank you for your help!
> >
> > By the way, My computer has plenty of disk space.
> >
> > All the best!
> >
> >
> > Dongsheng
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