Beniamino Sciacca wrote:
Dear GMX users,
Viewing my simulations with VMD I see water molecules that become
longer; in fact in the simulation I can see some lines (that are water
molecules).
Why?
Is that a simulation problem or a VMD one?
I can't tell from your description. Unless you use trjconv properly, VMD
will show water molecules that cross the simulation cell boundaries with
lines joining atoms on opposite sides of the simulation cell. If "become
longer" means only a gradual and incremental increase, then you have a
simulation problem.
Mark
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