Have you followed the Drug-Enzime complex tutorial found at http://www2.umdnj.edu/~kerrigje/structbio_II.htm ?
On Fri, 09 Jun 2006 20:40:28 +0200, David van der Spoel <[EMAIL PROTECTED]> wrote: > Robson Pacheco wrote: > > Dear Sirs > > > > I am new in molecular simulations, and I am experiencing many problems > > in generating topology files (GROMACS) for the systems I intend to > > study. I used The Dundee PRODRG Server in order to generate the files > > for a GROMACS run, however, the program pdb2gmx prompted an error > > message: > > "Residue 'DRG' not found in residue topology database" > > I would like some help on this issue if possible. > > Please ask questions on the mailing list. > > > > > Thank you in advance > > > -- > David. > ________________________________________________________________________ > David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group, > Dept. of Cell and Molecular Biology, Uppsala University. > Husargatan 3, Box 596, 75124 Uppsala, Sweden > phone: 46 18 471 4205 fax: 46 18 511 755 > [EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se > ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php -- "Pray for mercy"--Puss-in-Boots _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
