Jones de Andrade wrote:
Hi all.
Program received signal SIGSEGV, Segmentation fault.
0x00002aaaab15a88c in __find_specmb () from /lib64/tls/libc.so.6
(gdb) where
#0 0x00002aaaab15a88c in __find_specmb () from /lib64/tls/libc.so.6
#1 0x00002aaaab140e6f in vfprintf () from /lib64/tls/libc.so.6
#2 0x00002aaaab15e2a9 in vsprintf () from /lib64/tls/libc.so.6
#3 0x00002aaaab149568 in sprintf () from /lib64/tls/libc.so.6
#4 0x000000000040248b in mknb_code (format=0x40cd2e "s") at
mknb_metacode.c:282
#5 0x0000000000401aaf in mknb_declare_real (name=0x7fffffffd0d0
"ix1,iy1,iz1,fix1,fiy1,fiz1") at mknb_metacode.c:104
#6 0x0000000000403e62 in mknb_declare_variables () at
mknb_declarations.c:258
#7 0x0000000000400fef in mknb_write_function () at mknb.c:154
#8 0x00000000004017cf in main (argc=1, argv=0x7fffffffd628) at mknb.c:348
Well, what does this kind of stuff means? It worries about the libc 4
times, but also about the other files. :( What shall I look at?
It shows where in the GROMACS code the error started (mknb_metacode.c
282) and that the Intel compiler f*cked up the va_args. I suggest you
compile the mknb program with gcc and the rest with icc.
David Mathog: thanks also. But, how could I fix that?
Thanks a lot for everything.
Jones
On 5/31/06, *David van der Spoel* <[EMAIL PROTECTED]
<mailto:[EMAIL PROTECTED]>> wrote:
gdb> where
it will tell you the line in the mknb this was called from.
if you call a library function with garbage data it may crash there...
--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
[EMAIL PROTECTED]
<mailto:[EMAIL PROTECTED]> [EMAIL PROTECTED]
<mailto:[EMAIL PROTECTED]> http://folding.bmc.uu.se
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--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
[EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se
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