That'd certainly work if the movement is continuous, but if there are many fluctuations near the crossover point then sorting out which steps to fudge it at could be a pain. Assuming you only care about the Z seperation, I'd be tempted to use g_traj to plot both groups, and subtract the z-position of one group from the other at each step.
Just a thought. --- Xavier Periole <[EMAIL PROTECTED]> wrote: > Kay Gottschalk wrote: > > > They are not interacting. The distance is larger > than 40 Å. But > > still,if the distance to the mirror image is 41 Å > and to the same > > protein in the box is 45 Å, the distance to the > mirror image will be > > plotted... We are indeed pulling on z. > > Best, Kay. > > Good, so the solution I proposed should solve your > problem !! > > XAvier > > -- > ---------------------------------- > Xavier Periole - Ph.D. > > Dept. of Biophysical Chemistry / MD Group > Univ. of Groningen > Nijenborgh 4 > 9747 AG Groningen > The Netherlands > > Tel: +31-503634329 > Fax: +31-503634398 > email: [EMAIL PROTECTED] > web-page: http://md.chem.rug.nl/~periole > ---------------------------------- > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the > list. Use the > www interface or send it to > [EMAIL PROTECTED] > Can't post? Read > http://www.gromacs.org/mailing_lists/users.php > __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
