karamyog singh wrote:
I guess since after the first run, the forces between atoms is not zero(only negligible), when i do the 2nd run, the atoms start moving under the action of these forces and since there is no temperature scaling or pressure scaling, we can or might see an increase in KE as in my case. So an increase might be correct.

If you are doing constant energy, if the PE is not changing (much) then neither should the KE. If KE is increasing *over* time, while PE is staying the same then you can't be doing NVE. The most likely suspect here is the use of cutoffs, like I have been saying all along. The use of (electrostatic) cutoffs is well known to cause heating in NVE simulations.

Mark

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