Hi
GROMACS manual pp. 116.
Why should you want to setup a constant pulling force? The force is the
information, you want to derive with pulling.
You have to setup a spring constant and the pull velocity; see the
manual for a howto. With these parameters and the positions in the
output file you can derive the force-profile.
regards
Maik Goette, Dipl. Biol.
Max Planck Institute for Biophysical Chemistry
Theoretical & computational biophysics department
Am Fassberg 11
37077 Goettingen
Germany
Tel. : ++49 551 201 2310
Fax : ++49 551 201 2302
Email : mgoette[at]mpi-bpc.mpg.de
mgoette2[at]gwdg.de
WWW : http://www.mpibpc.gwdg.de/groups/grubmueller/
Hua Li wrote:
Dear all,
Would anybody tell me how to do it?
I don't understand clearly what's meaning of those parameters in
pull.ppa with AFM otion?
Thanks a lot!
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