List User wrote:
What is the best approach to handle N and C-terminal modifications
(e.g. formylation, chemical modification)?  Is it better to define
custom residue types or to adjust the termini database?  Thanks in
advance for your advice.

I would suggest custom residue types and/or termini, rather than modifying existing termini in the termini database and forgetting some time in the future that they are modified and wrongly re-using them for something else.

Mark
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