Hi,

Just add many ions randomly using genion. After equilibration, you'll find some of them in the solution and some near the DNA.

Ran.

Beniamino Sciacca wrote:

Hi!
my system is DNA in a box with solvent.
I want to put in the box a lot of ions (NA+, Cl-,....).
How can I do it?
I want some of them dispersed in the solution, and some of them near the DNA molecule.
thanks for your help.
Beniamino Sciacca

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Ran Friedman
http://bioinfo.tau.ac.il/~ran
Laser Laboratory for Fast Reactions in Biology
Department of Biochemistry
Faculty of Life Sciences
Tel-Aviv University
Tel. +972-3-6409824
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