Hi ALL I got a lot of errors when I did the modifications in the file make_edi.c in the mnt1.usr/akshayp/src/tools/
Around 101 errors in the same file I do not understand why all these errors are happening. Please help me to take care of these errors and install GROMACS 3.3.1 on SGI Irix. Looking forward to hear Regards Akshay |-----Original Message----- |From: Yang Ye [mailto:[EMAIL PROTECTED] |Sent: Tuesday, April 18, 2006 7:50 PM |To: [EMAIL PROTECTED]; Discussion list for GROMACS users |Subject: Re: [gmx-users] GROMACS 3.3.1 installation on SGI (Irix): 3 | |You may replace line 579 as | |evStepOptions[evLINFIX] => evStepOptions[0] | |line 581 as | |evStepOptions[evLINACC] => evStepOptions[1] | |line 583 as | |evStepOptions[evRADFIX] => evStepOptions[2] | |Just a quick fix. | |Yang Ye | |Akshay Patny wrote: |> Hi |> |> As suggested I removed one of the semicolons before the double semicolon |in |> one of the lines in the file gmx_chi.c |> |> I re-installed again and this time it gave me the following error. Can |you |> suggest what is going wrong and how can I fix it now? |> |___________________________________________________________________________ |_ |> cc-1028 cc: ERROR File = make_edi.c, Line = 579 |> The expression used must have a constant value. |> |> { evStepOptions[evLINFIX], FALSE, etSTR, {&evParams[evLINFIX]}, |> ^ |> |> cc-1028 cc: ERROR File = make_edi.c, Line = 581 |> The expression used must have a constant value. |> |> { evStepOptions[evLINACC], FALSE, etSTR, {&evParams[evLINACC]}, |> ^ |> |> cc-1028 cc: ERROR File = make_edi.c, Line = 583 |> The expression used must have a constant value. |> |> { evStepOptions[evRADFIX], FALSE, etREAL, {&radfix}, |> ^ |> |> cc-1552 cc: WARNING File = make_edi.c, Line = 622 |> The variable "bTop" is set but never used. |> |> bool bTop, bM, bFit1; |> ^ |> |> 3 errors detected in the compilation of "make_edi.c". |> *** Error code 2 (bu21) |> *** Error code 1 (bu21) |> *** Error code 1 (bu21) |> |___________________________________________________________________________ |_ |> |> I really appreciate your help. |> |> Kind Regards |> Akshay |> |> Akshay Patny |> |> |> Graduate Research Assistant |> Faser Hall 417, Department of Medicinal Chemistry |> Research Institute of Pharmaceutical Sciences |> University of Mississippi |> University, MS 38677 |> E-mail: [EMAIL PROTECTED] |> Tel: 662-915-1286 (office); Web: www.olemiss.edu |> |> |-----Original Message----- |> |From: David van der Spoel [mailto:[EMAIL PROTECTED] |> |Sent: Tuesday, April 18, 2006 12:22 AM |> |To: [EMAIL PROTECTED]; Discussion list for GROMACS users |> |Subject: Re: [gmx-users] GROMACS 3.3.1 installation on SGI (Irix): 2 |> | |> |Akshay Patny wrote: |> |> Hi |> |> Hi ALl |> |> |> |> I read through some of the e-mails of B. Nataraj and Erik Lindahl for |> |> similar problem on compiling of GROMACS 3.3.1 on SGI IRIX. |> |> |> |> As my error also pointed to a problem in "gmx_fft_fftw3.c", I replaced |> |the |> |> 'void' with 'char' in the line 150 of the file, as suggested. |> |> |> |> I got the errors exactly the same as B. Nataraj got after doing this |> |> modification, which is listed at |> |> http://www.gromacs.org/pipermail/gmx-users/2006-April/020969.html |> |> |> |> The same error is given below. I could not understand how to fix this |> |error |> |> and run GROMACS successfully. |> |> |> |> Dr. Erik Lindahl wrote that: "As far as I can see that file is |perfectly |> |> valid ANSI C - there is no executable statement in the declaration |> |section." |> |> |> |> However, I still do not know how to fix this? |> |> |> | |> |there is a double semicolon on one of the lines before it. please remove |> |it and retry. |> | |> |> Please help. |> |> |> |> Regards |> |> Akshay |> |> |> |> Error is given below: |> |> |> ||__________________________________________________________________________ |_ |> |_ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1031 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> static real core_frac=0.5 ; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1032 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> t_pargs pa[] = { |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1073 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> FILE *log; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1074 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> int natoms,nlist,naa,idum,nbin; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1075 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> t_atoms atoms; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1076 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> rvec *x; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1077 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> matrix box; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1078 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> char title[256],grpname[256]; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1079 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> t_dlist *dlist; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1080 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> char **aa; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1081 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> bool bChi,bCorr,bSSHisto; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1082 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> bool bDo_rt, bDo_oh, bDo_ot, bDo_jc ; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1083 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> real dt=0, traj_t_ns; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1085 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> atom_id isize,*index; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1086 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> int ndih,nactdih,nf; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1087 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> real **dih,*trans_frac,*aver_angle,*time; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1088 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> int i,j,**chi_lookup,*xity; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1090 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> t_filenm fnm[] = { |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1106 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> int npargs; |> |> ^ |> |> |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1107 |> |> A declaration cannot appear after an executable statement in a |block. |> |> |> |> t_pargs *ppa; |> |> ^ |> |> |> |> 20 errors detected in the compilation of "gmx_chi.c". |> |> *** Error code 1 (bu21) |> |> *** Error code 1 (bu21) |> |> *** Error code 1 |> |> |> ||(bu21)____________________________________________________________________ |_ |> |_ |> |> ______ |> |> |> |> |> |> Akshay Patny |> |> |> |> Graduate Research Assistant |> |> Faser Hall 417, Department of Medicinal Chemistry |> |> Research Institute of Pharmaceutical Sciences |> |> University of Mississippi |> |> University, MS 38677 |> |> E-mail: [EMAIL PROTECTED] |> |> Tel: 662-915-1286 (office); Web: www.olemiss.edu |> |> |> |> |> |> _______________________________________________ |> |> gmx-users mailing list gmx-users@gromacs.org |> |> http://www.gromacs.org/mailman/listinfo/gmx-users |> |> Please don't post (un)subscribe requests to the list. Use the |> |> www interface or send it to [EMAIL PROTECTED] |> |> Can't post? Read http://www.gromacs.org/mailing_lists/users.php |> | |> | |> |-- |> |David. |> |________________________________________________________________________ |> |David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group, |> |Dept. of Cell and Molecular Biology, Uppsala University. |> |Husargatan 3, Box 596, 75124 Uppsala, Sweden |> |phone: 46 18 471 4205 fax: 46 18 511 755 |> |[EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se |> |++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ |> |> _______________________________________________ |> gmx-users mailing list gmx-users@gromacs.org |> http://www.gromacs.org/mailman/listinfo/gmx-users |> Please don't post (un)subscribe requests to the list. Use the |> www interface or send it to [EMAIL PROTECTED] |> Can't post? Read http://www.gromacs.org/mailing_lists/users.php |> |> | |-- |/Regards,/ |Yang Ye |/Computational Biology Lab |School of Biological Sciences |Nanyang Technological University |Singapore |Tel: 6316-2884 |/ | _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
