I know this question has been discussed a number of times on the list, but almost everytime it has been discussed in reference to the index file. I am getting this error during grompp for the position restrained MD even though I am not using any index file. The only groups I have are solvent and protein and accordingly, there are two columns for these two in the tau_t and ref_t fields in the pr.mdp file:

tau_t=       0.1         0.1
tc_grps=   protein  sol
ref_t=        300       300

my command is:

grompp -f pr.mdp -c test_b4pr.gro -p test.top -o test_em.tpr

In spite of this, the error is showing up again and again. The top file also has a row only for protein and solvent. Help would be gladly appreciated as I cannot think of any reason since all the files look ok.
Thanks very much
Ashutosh Jogalekar
Emory University



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