Anthony Cruz Balberdi wrote:
Hi:
I am using the g_sas with the -or option . The output file have 3 colums: first the res number, second the sasa value,
third I dont know. To what corresponds the third columnin the file?
A quick peak in the source code:
fluc2 = res_area2[res]-sqr(res_area[res]);
if (fluc2 < 0)
fluc2 = 0;
fprintf(fp,"%10d %10g %10g\n",res+1,res_area[res],sqrt(fluc2));
In other words, it is the standard deviation of the area over the
trajectory.
Best regards
Anthony
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Antes ahora y siempre COLEGIO
University of Puerto Rico at Mayaguez
http://www.uprm.edu
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David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
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