The entire submodule section in the superproject will be per-worktree
and written to $GIT_DIR/config.worktree.

The behavior when you only have one worktree (and not enabled
extensions.worktreeConfig) is the same as before, everything is still
written in $GIT_DIR/config

Signed-off-by: Nguyễn Thái Ngọc Duy <pclo...@gmail.com>
---
 builtin/submodule--helper.c    | 14 +++++---------
 t/t2405-worktree-submodules.sh | 28 ++++++++++++++++++++++++++++
 2 files changed, 33 insertions(+), 9 deletions(-)

diff --git a/builtin/submodule--helper.c b/builtin/submodule--helper.c
index 7b328ec060..6b749b41fb 100644
--- a/builtin/submodule--helper.c
+++ b/builtin/submodule--helper.c
@@ -639,15 +639,11 @@ static void init_submodule(const char *path, const char 
*prefix,
                die(_("No url found for submodule path '%s' in .gitmodules"),
                        displaypath);
 
-       /*
-        * NEEDSWORK: In a multi-working-tree world, this needs to be
-        * set in the per-worktree config.
-        *
-        * Set active flag for the submodule being initialized
-        */
+       check_multi_worktree_support();
+
        if (!is_submodule_active(the_repository, path)) {
                strbuf_addf(&sb, "submodule.%s.active", sub->name);
-               git_config_set_gently(sb.buf, "true");
+               repo_config_set_worktree_gently(the_repository, sb.buf, "true");
                strbuf_reset(&sb);
        }
 
@@ -672,7 +668,7 @@ static void init_submodule(const char *path, const char 
*prefix,
                        free(oldurl);
                }
 
-               if (git_config_set_gently(sb.buf, url))
+               if (repo_config_set_worktree_gently(the_repository, sb.buf, 
url))
                        die(_("Failed to register url for submodule path '%s'"),
                            displaypath);
                if (!(flags & OPT_QUIET))
@@ -693,7 +689,7 @@ static void init_submodule(const char *path, const char 
*prefix,
                } else
                        upd = 
xstrdup(submodule_strategy_to_string(&sub->update_strategy));
 
-               if (git_config_set_gently(sb.buf, upd))
+               if (repo_config_set_worktree_gently(the_repository, sb.buf, 
upd))
                        die(_("Failed to register update mode for submodule 
path '%s'"), displaypath);
        }
        strbuf_release(&sb);
diff --git a/t/t2405-worktree-submodules.sh b/t/t2405-worktree-submodules.sh
index 3ee5380e88..2ee3e2d039 100755
--- a/t/t2405-worktree-submodules.sh
+++ b/t/t2405-worktree-submodules.sh
@@ -39,4 +39,32 @@ test_expect_success 'add submodules' '
        test -d .git/worktrees/secondary/modules/sub2
 '
 
+test_expect_success 'init submodules' '
+       git clone --no-local .git cloned &&
+       (
+               cd cloned &&
+               git config extensions.worktreeConfig true &&
+               git submodule init sub1 &&
+               git worktree add secondary origin/secondary &&
+               cd secondary &&
+               git submodule init sub2
+       ) &&
+
+       git -C cloned config --get-regexp "submodule.*" | sort >actual1 &&
+       cat >expected1 <<-EOF &&
+       submodule.sub1.active true
+       submodule.sub1.url $(pwd)/submodsrc
+       EOF
+       test_cmp expected1 actual1 &&
+       ! test -d cloned/.git/modules/sub1 &&
+
+       git -C cloned/secondary config --get-regexp "submodule.*" | sort 
>actual2 &&
+       cat >expected2 <<-EOF &&
+       submodule.sub2.active true
+       submodule.sub2.url $(pwd)/submodsrc
+       EOF
+       test_cmp expected2 actual2 &&
+       ! test -d cloned/.git/worktrees/secondary/modules/sub2
+'
+
 test_done
-- 
2.20.0.482.g66447595a7

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