Hi,
I was able to configure that sample right now with no issues using a GS
2.13.0.
Do you have any chance to raise the logging level (I think
GEOTOOLS_DEVELOPER should be enough) and try again?
(by this way we should be able to see some more info about what is going
wrong).

Does the user running geoserver has writing permissions on the folder
containing the data? (It needs to create some metadata/caching files for
internal indexing)
Before repeating the test with higher logging, you may check if a folder
like this exists beside your data file. Delete that folder.

.b5km_ssta_20180416_???????
(note it starts with a dot and it ends with an hash id).

Please, let us know.
Regards,
Daniele




On Thu, Apr 19, 2018 at 10:04 AM, pzkpfwiii <pzkpfw...@gmail.com> wrote:

> We tried to load several netcdf files of ocean data collected from NOAA and
> other institutions to geoserver 2.13.0. Those nc files could be loaded fine
> on ncWMS2 before. But we got error as bellow for every nc files on
> geoserver
> with netcdf plugin. We have check all nc files and can't find the reason.
>
> Thank you in advance!
>
> netcdf file:
> ftp://ftp.star.nesdis.noaa.gov/pub/sod/mecb/crw/data/5km/
> v3/nc/v1/daily/ssta/2018/b5km_ssta_20180416.nc
>
> log:
> 2018-04-19 10:34:20,724 INFO [geoserver.web] - Getting list of coverages
> for
> saved store file:data/oceandata/ssta/b5km_ssta_20180416.nc
> java.lang.RuntimeException: Could not list layers for this store, an error
> occurred retrieving them: Failed to create reader from
> file:data/oceandata/ssta/b5km_ssta_20180416.nc and hints Hints:
>   EXECUTOR_SERVICE = java.util.concurrent.ThreadPoolExecutor@a1c908[
> Running,
> pool size = 0, active threads = 0, queued tasks = 0, completed tasks = 0]
>   REPOSITORY       = org.geoserver.catalog.CatalogRepository@f470b5
>
>
> System defaults:
>   LENIENT_DATUM_SHIFT              = true
>
>   GRID_COVERAGE_FACTORY            = GridCoverageFactory
>
>     TILE_ENCODING                  = null
>
>   FORCE_AXIS_ORDER_HONORING        = http
>
>   STYLE_FACTORY                    = StyleFactoryImpl
>
>   FEATURE_FACTORY                  =
> org.geotools.feature.LenientFeatureFactoryImpl@276db8
>   COMPARISON_TOLERANCE             = 1.0E-8
>
>   FORCE_LONGITUDE_FIRST_AXIS_ORDER = true
>
>   FILTER_FACTORY                   = FilterFactoryImpl
>
>
>     at
> org.geoserver.web.data.layer.NewLayerPageProvider.getItemsInternal(
> NewLayerPageProvider.java:174)
>     at
> org.geoserver.web.data.layer.NewLayerPageProvider.getItems(
> NewLayerPageProvider.java:61)
>     at
> org.geoserver.web.wicket.GeoServerDataProvider.getFilteredItems(
> GeoServerDataProvider.java:216)
>     at
> org.geoserver.web.data.layer.NewLayerPageProvider.getFilteredItems(
> NewLayerPageProvider.java:189)
>     at
> org.geoserver.web.wicket.GeoServerDataProvider.size(
> GeoServerDataProvider.java:234)
>     at
> org.geoserver.web.wicket.GeoServerTablePanel$PagerDelegate.updateMatched(
> GeoServerTablePanel.java:617)
>     at
> org.geoserver.web.wicket.GeoServerTablePanel$PagerDelegate.<init>(
> GeoServerTablePanel.java:610)
>     at
> org.geoserver.web.wicket.GeoServerTablePanel.<init>(
> GeoServerTablePanel.java:178)
>     at
> org.geoserver.web.wicket.GeoServerTablePanel.<init>(
> GeoServerTablePanel.java:99)
>     at
> org.geoserver.web.data.layer.NewLayerPage$1.<init>(NewLayerPage.java:112)
>     at
> org.geoserver.web.data.layer.NewLayerPage.<init>(NewLayerPage.java:112)
>     at
> org.geoserver.web.data.store.CoverageStoreNewPage.onSuccessfulSave(
> CoverageStoreNewPage.java:86)
>     at
> org.geoserver.web.data.store.CoverageStoreNewPage.onSave(
> CoverageStoreNewPage.java:74)
>     at
> org.geoserver.web.data.store.AbstractCoverageStorePage$1.onSubmit(
> AbstractCoverageStorePage.java:122)
>     at
> org.apache.wicket.ajax.markup.html.form.AjaxSubmitLink$1.
> onSubmit(AjaxSubmitLink.java:111)
>     at
> org.apache.wicket.ajax.form.AjaxFormSubmitBehavior$
> AjaxFormSubmitter.onSubmit(AjaxFormSubmitBehavior.java:215)
>     at
> org.apache.wicket.markup.html.form.Form.delegateSubmit(Form.java:1309)
>     at org.apache.wicket.markup.html.form.Form.process(Form.java:976)
>     at
> org.apache.wicket.markup.html.form.Form.onFormSubmitted(Form.java:797)
>     at
> org.apache.wicket.ajax.form.AjaxFormSubmitBehavior.onEvent(
> AjaxFormSubmitBehavior.java:171)
>     at
> org.apache.wicket.ajax.AjaxEventBehavior.respond(
> AjaxEventBehavior.java:155)
>     at
> org.apache.wicket.ajax.AbstractDefaultAjaxBehavior.onRequest(
> AbstractDefaultAjaxBehavior.java:601)
>     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>     at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
>     at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
>     at java.lang.reflect.Method.invoke(Unknown Source)
>     at
> org.apache.wicket.RequestListenerInterface.internalInvoke(
> RequestListenerInterface.java:258)
>     at
> org.apache.wicket.RequestListenerInterface.invoke(
> RequestListenerInterface.java:241)
>     at
> org.apache.wicket.core.request.handler.ListenerInterfaceRequestHandle
> r.invokeListener(ListenerInterfaceRequestHandler.java:248)
>     at
> org.apache.wicket.core.request.handler.ListenerInterfaceRequestHandle
> r.respond(ListenerInterfaceRequestHandler.java:234)
>     at
> org.apache.wicket.request.cycle.RequestCycle$HandlerExecutor.respond(
> RequestCycle.java:895)
>     at
> org.apache.wicket.request.RequestHandlerStack.execute(
> RequestHandlerStack.java:64)
>     at
> org.apache.wicket.request.cycle.RequestCycle.execute(
> RequestCycle.java:265)
>     at
> org.apache.wicket.request.cycle.RequestCycle.processRequest(RequestCycle.
> java:222)
>     at
> org.apache.wicket.request.cycle.RequestCycle.processRequestAndDetach(
> RequestCycle.java:293)
>     at
> org.apache.wicket.protocol.http.WicketFilter.processRequestCycle(
> WicketFilter.java:261)
>     at
> org.apache.wicket.protocol.http.WicketFilter.processRequest(WicketFilter.
> java:203)
>     at
> org.apache.wicket.protocol.http.WicketServlet.doPost(
> WicketServlet.java:159)
>     at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
>     at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
>     at
> org.springframework.web.servlet.mvc.ServletWrappingController.
> handleRequestInternal(ServletWrappingController.java:157)
>     at
> org.springframework.web.servlet.mvc.AbstractController.handleRequest(
> AbstractController.java:174)
>     at
> org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter.handle(
> SimpleControllerHandlerAdapter.java:50)
>     at
> org.springframework.web.servlet.DispatcherServlet.
> doDispatch(DispatcherServlet.java:963)
>     at
> org.springframework.web.servlet.DispatcherServlet.
> doService(DispatcherServlet.java:897)
>     at
> org.springframework.web.servlet.FrameworkServlet.processRequest(
> FrameworkServlet.java:970)
>     at
> org.springframework.web.servlet.FrameworkServlet.
> doPost(FrameworkServlet.java:872)
>     at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
>     at
> org.springframework.web.servlet.FrameworkServlet.
> service(FrameworkServlet.java:846)
>     at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
>     at
> org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:808)
>     at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.
> doFilter(ServletHandler.java:1669)
>     at
> org.geoserver.filters.ThreadLocalsCleanupFilter.doFilter(
> ThreadLocalsCleanupFilter.java:28)
>     at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.
> doFilter(ServletHandler.java:1652)
>     at
> org.geoserver.filters.SpringDelegatingFilter$Chain.doFilter(
> SpringDelegatingFilter.java:75)
>     at
> org.geoserver.wms.animate.AnimatorFilter.doFilter(AnimatorFilter.java:71)
>     at
> org.geoserver.filters.SpringDelegatingFilter$Chain.doFilter(
> SpringDelegatingFilter.java:71)
>     at
> org.geoserver.filters.SpringDelegatingFilter.doFilter(
> SpringDelegatingFilter.java:46)
>     at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.
> doFilter(ServletHandler.java:1652)
>     at
> org.geoserver.platform.AdvancedDispatchFilter.doFilter(
> AdvancedDispatchFilter.java:50)
>     at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.
> doFilter(ServletHandler.java:1652)
>     at
> org.springframework.security.web.FilterChainProxy$
> VirtualFilterChain.doFilter(FilterChainProxy.java:316)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:69)
>     at
> org.springframework.security.web.access.intercept.
> FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:126)
>     at
> org.springframework.security.web.access.intercept.
> FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:90)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:73)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter.doFilter(
> GeoServerCompositeFilter.java:92)
>     at
> org.springframework.security.web.FilterChainProxy$
> VirtualFilterChain.doFilter(FilterChainProxy.java:330)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:69)
>     at
> org.springframework.security.web.access.ExceptionTranslationFilter.
> doFilter(ExceptionTranslationFilter.java:114)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:73)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter.doFilter(
> GeoServerCompositeFilter.java:92)
>     at
> org.springframework.security.web.FilterChainProxy$
> VirtualFilterChain.doFilter(FilterChainProxy.java:330)
>     at
> org.geoserver.security.filter.GeoServerAnonymousAuthenticati
> onFilter.doFilter(GeoServerAnonymousAuthenticationFilter.java:54)
>     at
> org.springframework.security.web.FilterChainProxy$
> VirtualFilterChain.doFilter(FilterChainProxy.java:330)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:69)
>     at
> org.springframework.security.web.authentication.
> AbstractAuthenticationProcessingFilter.doFilter(
> AbstractAuthenticationProcessingFilter.java:205)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:73)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter.doFilter(
> GeoServerCompositeFilter.java:92)
>     at
> org.geoserver.security.filter.GeoServerUserNamePasswordAuthe
> nticationFilter.doFilter(GeoServerUserNamePasswordAuthe
> nticationFilter.java:116)
>     at
> org.springframework.security.web.FilterChainProxy$
> VirtualFilterChain.doFilter(FilterChainProxy.java:330)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:69)
>     at
> org.springframework.security.web.authentication.rememberme.
> RememberMeAuthenticationFilter.doFilter(RememberMeAuthenticationFilter
> .java:157)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:73)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter.doFilter(
> GeoServerCompositeFilter.java:92)
>     at
> org.springframework.security.web.FilterChainProxy$
> VirtualFilterChain.doFilter(FilterChainProxy.java:330)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:69)
>     at
> org.springframework.security.web.context.SecurityContextPersistenceFilt
> er.doFilter(SecurityContextPersistenceFilter.java:91)
>     at
> org.geoserver.security.filter.GeoServerSecurityContextPersis
> tenceFilter$1.doFilter(GeoServerSecurityContextPersistenceFilter.java:53)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:73)
>     at
> org.geoserver.security.filter.GeoServerCompositeFilter.doFilter(
> GeoServerCompositeFilter.java:92)
>     at
> org.springframework.security.web.FilterChainProxy$
> VirtualFilterChain.doFilter(FilterChainProxy.java:330)
>     at
> org.springframework.security.web.FilterChainProxy.doFilterInternal(
> FilterChainProxy.java:213)
>     at
> org.springframework.security.web.FilterChainProxy.doFilter(
> FilterChainProxy.java:176)
>     at
> org.geoserver.security.GeoServerSecurityFilterChainProxy.doFilter(
> GeoServerSecurityFilterChainProxy.java:152)
>     at
> org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(
> DelegatingFilterProxy.java:346)
>     at
> org.springframework.web.filter.DelegatingFilterProxy.doFilter(
> DelegatingFilterProxy.java:262)
>     at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.
> doFilter(ServletHandler.java:1652)
>     at org.geoserver.filters.LoggingFilter.doFilter(LoggingFilter.java:88)
>     at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.
> doFilter(ServletHandler.java:1652)
>     at
> org.geoserver.filters.XFrameOptionsFilter.doFilter(
> XFrameOptionsFilter.java:89)
>     at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.
> doFilter(ServletHandler.java:1652)
>     at org.geoserver.filters.GZIPFilter.doFilter(GZIPFilter.java:42)
>     at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.
> doFilter(ServletHandler.java:1652)
>     at
> org.geoserver.filters.SessionDebugFilter.doFilter(
> SessionDebugFilter.java:48)
>     at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.
> doFilter(ServletHandler.java:1652)
>     at
> org.geoserver.filters.FlushSafeFilter.doFilter(FlushSafeFilter.java:44)
>     at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.
> doFilter(ServletHandler.java:1652)
>     at
> org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(
> CharacterEncodingFilter.java:197)
>     at
> org.springframework.web.filter.OncePerRequestFilter.
> doFilter(OncePerRequestFilter.java:107)
>     at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.
> doFilter(ServletHandler.java:1652)
>     at
> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585)
>     at
> org.eclipse.jetty.server.handler.ScopedHandler.handle(
> ScopedHandler.java:143)
>     at
> org.eclipse.jetty.security.SecurityHandler.handle(
> SecurityHandler.java:577)
>     at
> org.eclipse.jetty.server.session.SessionHandler.
> doHandle(SessionHandler.java:223)
>     at
> org.eclipse.jetty.server.handler.ContextHandler.
> doHandle(ContextHandler.java:1127)
>     at
> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515)
>     at
> org.eclipse.jetty.server.session.SessionHandler.
> doScope(SessionHandler.java:185)
>     at
> org.eclipse.jetty.server.handler.ContextHandler.
> doScope(ContextHandler.java:1061)
>     at
> org.eclipse.jetty.server.handler.ScopedHandler.handle(
> ScopedHandler.java:141)
>     at
> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(
> ContextHandlerCollection.java:215)
>     at
> org.eclipse.jetty.server.handler.HandlerCollection.
> handle(HandlerCollection.java:110)
>     at
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(
> HandlerWrapper.java:97)
>     at org.eclipse.jetty.server.Server.handle(Server.java:499)
>     at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:310)
>     at
> org.eclipse.jetty.server.HttpConnection.onFillable(
> HttpConnection.java:257)
>     at
> org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:540)
>     at
> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(
> QueuedThreadPool.java:635)
>     at
> org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(
> QueuedThreadPool.java:555)
>     at java.lang.Thread.run(Unknown Source)
> Caused by: java.io.IOException: Failed to create reader from
> file:data/oceandata/ssta/b5km_ssta_20180416.nc and hints Hints:
>   EXECUTOR_SERVICE = java.util.concurrent.ThreadPoolExecutor@a1c908[
> Running,
> pool size = 0, active threads = 0, queued tasks = 0, completed tasks = 0]
>   REPOSITORY       = org.geoserver.catalog.CatalogRepository@f470b5
>
>
> System defaults:
>   LENIENT_DATUM_SHIFT              = true
>
>   GRID_COVERAGE_FACTORY            = GridCoverageFactory
>
>     TILE_ENCODING                  = null
>
>   FORCE_AXIS_ORDER_HONORING        = http
>
>   STYLE_FACTORY                    = StyleFactoryImpl
>
>   FEATURE_FACTORY                  =
> org.geotools.feature.LenientFeatureFactoryImpl@276db8
>   COMPARISON_TOLERANCE             = 1.0E-8
>
>   FORCE_LONGITUDE_FIRST_AXIS_ORDER = true
>
>   FILTER_FACTORY                   = FilterFactoryImpl
>
>
>     at
> org.geoserver.catalog.ResourcePool.getGridCoverageReader(
> ResourcePool.java:1509)
>     at
> org.geoserver.catalog.ResourcePool.getGridCoverageReader(
> ResourcePool.java:1453)
>     at
> org.geoserver.catalog.impl.CoverageStoreInfoImpl.getGridCoverageReader(
> CoverageStoreInfoImpl.java:59)
>     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>     at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
>     at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
>     at java.lang.reflect.Method.invoke(Unknown Source)
>     at
> org.geoserver.catalog.impl.ModificationProxy.invoke(
> ModificationProxy.java:147)
>     at com.sun.proxy.$Proxy28.getGridCoverageReader(Unknown Source)
>     at
> org.geoserver.web.data.layer.NewLayerPageProvider.getItemsInternal(
> NewLayerPageProvider.java:95)
>     ... 129 more
>
>
>
> --
> Sent from: http://osgeo-org.1560.x6.nabble.com/GeoServer-User-
> f3786390.html
>
> ------------------------------------------------------------
> ------------------
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> _______________________________________________
> Geoserver-users mailing list
>
> Please make sure you read the following two resources before posting to
> this list:
> - Earning your support instead of buying it, but Ian Turton:
> http://www.ianturton.com/talks/foss4g.html#/
> - The GeoServer user list posting guidelines: http://geoserver.org/comm/
> userlist-guidelines.html
>
> If you want to request a feature or an improvement, also see this:
> https://github.com/geoserver/geoserver/wiki/Successfully-
> requesting-and-integrating-new-features-and-improvements-in-GeoServer
>
>
> Geoserver-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/geoserver-users
>



-- 
Regards,
Daniele Romagnoli
==
GeoServer Professional Services from the experts! Visit http://goo.gl/it488V
for more information.
==

Ing. Daniele Romagnoli
Senior Software Engineer

GeoSolutions S.A.S.
Via di Montramito 3/A
55054  Massarosa (LU)
Italy
phone: +39 0584 962313
fax:      +39 0584 1660272

http://www.geo-solutions.it
http://twitter.com/geosolutions_it

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Please make sure you read the following two resources before posting to this 
list:
- Earning your support instead of buying it, but Ian Turton: 
http://www.ianturton.com/talks/foss4g.html#/
- The GeoServer user list posting guidelines: 
http://geoserver.org/comm/userlist-guidelines.html

If you want to request a feature or an improvement, also see this: 
https://github.com/geoserver/geoserver/wiki/Successfully-requesting-and-integrating-new-features-and-improvements-in-GeoServer


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