> On 01/11/2017 08:48 PM, tkane1...@yahoo.co.jp wrote: >> >> >> >> On 01/09/2017 12:56 PM, tkane1...@yahoo.co.jp >> <mailto:tkane1...@yahoo.co.jp> wrote: >> > >> > On 01/09/2017 11:20 AM, tkane1...@yahoo.co.jp >> <mailto:tkane1...@yahoo.co.jp> >> > <mailto:tkane1...@yahoo.co.jp > <mailto:tkane1...@yahoo.co.jp>> >> wrote: >> > > >> > > >> > > On 01/08/2017 11:22 AM, tkane1...@yahoo.co.jp >> <mailto:tkane1...@yahoo.co.jp> >> > <mailto:tkane1...@yahoo.co.jp > <mailto:tkane1...@yahoo.co.jp>> >> > > <mailto:tkane1...@yahoo.co.jp >> <mailto:tkane1...@yahoo.co.jp> <mailto:tkane1...@yahoo.co.jp >> <mailto:tkane1...@yahoo.co.jp>>> >> > wrote: >> > > > Thank you for your reply. >> > > > Build.log is attached this mail. >> > > > Can you find the error? >> > > > >> > > > Tkane >> > > > >> > > > On 01/08/2017 12:01 AM, tkane1...@yahoo.co.jp >> <mailto:tkane1...@yahoo.co.jp> >> > <mailto:tkane1...@yahoo.co.jp > <mailto:tkane1...@yahoo.co.jp>> >> > > <mailto:tkane1...@yahoo.co.jp >> <mailto:tkane1...@yahoo.co.jp> <mailto:tkane1...@yahoo.co.jp >> <mailto:tkane1...@yahoo.co.jp>>> >> > > > <mailto:tkane1...@yahoo.co.jp >> <mailto:tkane1...@yahoo.co.jp> >> > <mailto:tkane1...@yahoo.co.jp > <mailto:tkane1...@yahoo.co.jp>> >> <mailto:tkane1...@yahoo.co.jp <mailto:tkane1...@yahoo.co.jp> >> > <mailto:tkane1...@yahoo.co.jp > <mailto:tkane1...@yahoo.co.jp>>>> >> > > wrote: >> > > > > Hello, >> > > > > I want to use dev-lang/R on gentoo/prefix. >> > > > > But failed to build libblas as follows. >> > > > > How can I fix this failure? >> > > > > >> > > > > cd >> > > > > >> > > > >> > > >> > >> > /home/kaneko/gentoo/var/tmp/portage/sci-libs/blas-reference-20151113-r1/work/blas-reference-20151113_build/BLAS/SRC >> > > > > && > /home/kaneko/gentoo/usr/bin/cmake -E >> > cmake_symlink_library >> > > > > ../../lib/libblas.so.3.6.0 > ../../lib/libblas.so.3 >> > > ../../lib/libblas.so >> > > > > make[2]: *** >> [BLAS/SRC/CMakeFiles/blas.dir/build.make:4002: >> > > > > lib/libblas.so] Error 1 >> > > > > make[2]: *** Deleting file > 'lib/libblas.so' >> > > > > make[2]: Leaving directory >> > > > > >> > > > >> > > >> > >> > '/home/kaneko/gentoo/var/tmp/portage/sci-libs/blas-reference-20151113-r1/work/blas-reference-20151113_build' >> > > > > make[1]: *** [CMakeFiles/Makefile2:1004: >> > > > > BLAS/SRC/CMakeFiles/blas.dir/all] Error 2 >> > > > > make[1]: Leaving directory >> > > > > >> > > > >> > > >> > >> > '/home/kaneko/gentoo/var/tmp/portage/sci-libs/blas-reference-20151113-r1/work/blas-reference-20151113_build' >> > > > > make: *** [Makefile:161: all] Error 2 >> > > > > make: Leaving directory >> > > > > >> > > > >> > > >> > >> > '/home/kaneko/gentoo/var/tmp/portage/sci-libs/blas-reference-20151113-r1/work/blas-reference-20151113_build/BLAS' >> > > > > * ERROR: >> sci-libs/blas-reference-20151113-r1::gentoo failed >> > > (compile >> > > > > phase): >> > > > > * emake failed >> > > > > >> > > > > emerge --info text file is attached. >> > > > > >> > > > > Tkane >> > > > >> > > > It doesn't look like the error is contained > in the >> snipped >> > you've >> > > > provided, it's probably further up in the > build log. >> > > > >> > > > Dan >> > > > >> > > > >> > > > >> > > >> > > Have you checked the output of `eselect blas` ? It > looks >> like it's >> > > failing in the linking stage, leading me to wonder if > an >> > implementation >> > > is selected. >> > > >> > > Dan >> > > >> > > Thank you for confirming various things. >> > > The result of eselect is below. >> > > >> > > $ eselect blas >> > > Usage: eselect blas <action> <options> >> > > >> > > Standard actions: >> > > help Display help text >> > > usage Display usage information >> > > version Display version information >> > > >> > > Extra actions: >> > > add <libdir> <file> <implementation> >> > > Add a new BLAS implementation >> > > libdir library directory where BLAS >> > > implementation is installed (lib, lib64, etc.) >> > > file path to file containing > symlink map >> > > implementation name of the BLAS > implementation >> > > list List all installed BLAS >> implementations >> > > set <implementation> Activate one of the > installed BLAS >> > > implementations >> > > implementation implementation name or number > (from >> > 'list' >> > > action) >> > > show Print the currently active BLAS >> > implementation >> > > $ eselect blas list >> > > $ eselect blas show >> > > >> > > >> > > Tkane >> > > >> > > >> > >> > >> > Have you tried the stable version of sci-libs/blas-reference? >> > >> > Dan >> > >> > >> > I do not understand it very well, >> > I think sci-libs/blas-reference-20151113-r1 is a stable version. >> > >> > $ eix -e sci-libs/blas-reference >> > * sci-libs/blas-reference >> > Available versions: 20070226-r4 20151113-r1 {doc} >> > Homepage: http://www.netlib.org/blas/ >> > Description: Basic Linear Algebra Subprograms F77 >> reference >> > implementations >> > >> > Tkane >> > >> > >> > >> > >> >> I don't use eix, but the one you are trying to install > (20151113-r1) is >> marked unstable: >> >> $ eshowkw sci-libs/blas-reference >> Keywords for sci-libs/blas-reference: >> | | u | >> | a a p s a n r | n | >> | l m h i p p m r m i i s | e u s | r >> | p d a p a p c a x i m 6 o s 3 | a s l | e >> | h 6 r p 6 p 6 r 8 p 6 8 s c 9 s | p e o | p >> | a 4 m a 4 c 4 c 6 s 4 k 2 v 0 h | i d t | o >> ------------+---------------------------------+-------+------- >> 20070226-r4 | + + + + + + + + + ~ o o o o ~ o | 5 o 0 | gentoo >> 20151113-r1 | ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ o o o o ~ o | 6 o | gentoo >> >> >> Dan >> >> Thank you. >> I understood that sci-libs/blas-reference-20151113-r1 is not stable. >> So I added a line in package.mask file as follows. >> >>> =sci-libs/blas-reference-20151113-r1 >> >> And I try emerge --ask dev-lang/R, >> sci-libs/acml-4.1.0-r2 is required instead of blas-reference-20151113-r1. >> >> But acml-4-1-0-gfortran-64bit.tgz download link missing, >> I cannot download acml-4-1-0-gfortran-64bit.tgz. >> >> How do I use dev-lang/R? >> >> $ emerge --ask dev-lang/R >> >> * IMPORTANT: 10 news items need reading for repository 'gentoo'. >> * Use eselect news read to view new items. >> >> >> * IMPORTANT: 7 config files in '/home/kaneko/gentoo/etc/portage' > need >> updating. >> * See the CONFIGURATION FILES and CONFIGURATION FILES UPDATE TOOLS >> * sections of the emerge man page to learn how to update config files. >> >> These are the packages that would be merged, in order: >> >> Calculating dependencies... done! >> [ebuild N F ] sci-libs/acml-4.1.0-r2 USE="openmp -doc -examples >> -gfortran (-ifc) -int64 {-test}" >> [ebuild N ] virtual/blas-3.6 >> [ebuild N ] dev-lang/R-3.3.2 USE="nls openmp (prefix) readline > -X >> -cairo -doc -icu -java -jpeg -lapack -minimal -perl -png -profile >> -static-libs -tiff -tk" >> >> Fetch instructions for sci-libs/acml-4.1.0-r2: >> * Please download the ACML from: >> * http://developer.amd.com/acml.jsp >> * and place it in /home/kaneko/gentoo/usr/portage/distfiles. >> * The previous versions could be found at >> * http://developer.amd.com/acmlarchive.jsp >> * SRC=acml-4-1-0-gfortran-64bit.tgz >> * amd64? ( >> * ifc? ( acml-4-1-0-ifort-64bit.tgz >> * int64? ( acml-4-1-0-ifort-64bit-int64.tgz ) ) >> * gfortran? ( acml-4-1-0-gfortran-64bit.tgz >> * int64? ( acml-4-1-0-gfortran-64bit-int64.tgz ) ) >> * !ifc? ( >> * !gfortran? ( acml-4-1-0-gfortran-64bit.tgz >> * int64? ( >> acml-4-1-0-gfortran-64bit-int64.tgz ) ) ) ) >> * x86? ( >> * ifc? ( acml-4-1-0-ifort-32bit.tgz ) >> * gfortran? ( acml-4-1-0-gfortran-32bit.tgz ) >> * !ifc? ( !gfortran? ( acml-4-1-0-gfortran-32bit.tgz ) ) ) >> >> Would you like to merge these packages? [Yes/No] no >> >> Quitting. >> >> Tkane >> >> >> >> > > Is there a specific reason you're trying to use the unstable versions? > > I just installed the stable versions with no issues: > > # emerge -pv R > > These are the packages that would be merged, in order: > > Calculating dependencies... done! > [ebuild N ] app-eselect/eselect-blas-0.1::gentoo 0 KiB > [ebuild N ] sci-libs/blas-reference-20070226-r4::gentoo > USE="-doc" > 0 KiB > [ebuild N ] virtual/blas-1.0::gentoo 0 KiB > [ebuild N ] dev-lang/R-3.2.2::gentoo USE="X cairo jpeg nls openmp > png readline tiff -doc -icu -java -lapack -minimal -perl (-prefix) > -profile -static-libs -tk" 0 KiB > > Total: 4 packages (4 new), Size of downloads: 0 KiB > > Dan >
There is no particular reason I'm trying to use the unstable versions. The Gentoo/prefix was installed by bootstrap-rap.sh script on RedHat5.3. https://wiki.gentoo.org/wiki/Prefix/libc I have not done much setting. Emerge --info is output as follows, but make.conf does not have such a description. ACCEPT_KEYWORDS="amd64 ~amd64 ~amd64-linux" It seems that this is the default because I do not set this value. I want to overwrite the setting of ACCEPT_KEYWORDS so that it will be stable only, but it will not work I just added the following line to make.conf as follows. ACCEPT_KEYWORDS="amd64" Tkane
