Yeah, thank you. ICU is a great pain in the ring!
Regards
On 11/19/2016 12:26 PM, c0a80...@gmail.com wrote:
On 11/19/16 12:50, Alec Ten Harmsel wrote:
El 19/11/2016 a las 07:47 a. m., Zhu Sha Zang escribió:
Hello everybody...
A single doubt here:
After an upgrade in package dev-libs/icu (from 57.1 to 58.1-r1) i
tried a package upgrade inside R and got that:
/> update.packages(checkBuilt=TRUE, ask=FALSE,
repos='http://cran.us.r-project.org')
trying URL 'http://cran.us.r-project.org/src/contrib/knitr_1.15.tar.gz'
Content type 'application/x-gzip' length 1027358 bytes (1003 KB)
==================================================
downloaded 1003 KB
* installing *source* package ‘knitr’ ...
** package ‘knitr’ successfully unpacked and MD5 sums checked
** R
** demo
** inst
** preparing package for lazy loading
Error in dyn.load(file, DLLpath = DLLpath, ...) :
*unable to load shared object
'/usr/lib64/R/library/stringi/libs/stringi.so':**
** libicui18n.so.57: cannot open shared object file: No such file or
directory*
/
I am not super familiar with R - can you try rebuilding R itself before
doing the CRAN package installs/upgrades? It looks like the path to ICU
is hard-coded somehow.
This kind of "bug" can I put inside bugs.gentoo.org or its a cran
package bug?
It is not the first time and i'm in dout about how to proceed.
If rebuildling R fixes this problem, you can file a bug so that
developers somehow trigger an R rebuild whenever ICU is updated.
Alec
Some R package update errors may be solved by creating a temporary
folder, for example ~/R/tmp (placing it under ~/R has the advantage of
sharing the same parent directory as the default per-user package
library), and then passing the following environment variable to R:
TMPDIR=$HOME/R/tmp. This allows certain configure scripts to be
executed if your /tmp is mounted noexec.
As for the stringi error, my system doesn't have it in the system-wide
library, either:
$ ls /usr/lib64/R/library/
KernSmooth compiler mgcv stats4
MASS datasets nlme survival
Matrix foreign nnet tcltk
base grDevices parallel tools
boot graphics rpart translations
class grid spatial utils
cluster lattice splines
codetools methods stats
But:
$ ls ~/R/x86_64-pc-linux-gnu-library/3.2/stringi
AUTHORS LICENSE R libs
CITATION Meta help
DESCRIPTION NAMESPACE html
INDEX NEWS include
Another possibility may be that your R has a useflag for icu (mine
doesn't):
$ equery uses R
[ Legend : U - final flag setting for installation]
[ : I - package is installed with flag ]
[ Colors : set, unset ]
* Found these USE flags for dev-lang/R-3.2.2:
U I
...
+ + doc : Add extra documentation (API, Javadoc, etc). It is
recommended to enable per package instead of globally
- - icu : Enable ICU (Internationalization Components for
Unicode) support, using dev-libs/icu
- - java : Add support for Java
...
Vitor
