commit: f2888f2e2f6610f9876bb14d112f8fdcb696248a Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Wed Feb 18 13:21:25 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Wed Feb 18 13:21:25 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f2888f2e
sci-biology/discrover: fix SLOT operators; correct ruby deps Package-Manager: portage-2.2.17 --- sci-biology/discrover/ChangeLog | 4 ++++ sci-biology/discrover/discrover-1.5.2.ebuild | 28 +++++++++++++++------------ sci-biology/discrover/discrover-9999.ebuild | 29 ++++++++++++++++------------ sci-biology/discrover/metadata.xml | 24 +++++++++++------------ 4 files changed, 49 insertions(+), 36 deletions(-) diff --git a/sci-biology/discrover/ChangeLog b/sci-biology/discrover/ChangeLog index fd6eb45..aba75b4 100644 --- a/sci-biology/discrover/ChangeLog +++ b/sci-biology/discrover/ChangeLog @@ -2,6 +2,10 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 18 Feb 2015; Justin Lecher <j...@gentoo.org> discrover-1.5.2.ebuild, + discrover-9999.ebuild, metadata.xml: + sci-biology/discrover: fix SLOT operators; correct ruby deps + *discrover-1.5.2 (27 Jan 2015) 27 Jan 2015; Jonas Maaskola <jo...@maaskola.de> +discrover-1.5.2.ebuild, diff --git a/sci-biology/discrover/discrover-1.5.2.ebuild b/sci-biology/discrover/discrover-1.5.2.ebuild index b17687e..f0992e2 100644 --- a/sci-biology/discrover/discrover-1.5.2.ebuild +++ b/sci-biology/discrover/discrover-1.5.2.ebuild @@ -3,7 +3,11 @@ # $Header: $ EAPI=5 -inherit cmake-utils + +USE_RUBY="ruby19" +RUBY_OPTIONAL=yes + +inherit cmake-utils ruby-fakegem DESCRIPTION="A sequence motif discovery tool that uses discriminative learning" HOMEPAGE="https://github.com/maaskola/discrover"; @@ -19,14 +23,14 @@ RDEPEND=" cairo? ( x11-libs/cairo ) dreme? ( sci-biology/meme ) tikzlogo? ( - dev-lang/ruby + $(ruby_implementations_depend) dev-texlive/texlive-latex dev-texlive/texlive-latexextra dev-tex/pgf dev-tex/xcolor media-gfx/imagemagick ) - misc_scripts? ( dev-lang/ruby ) + misc_scripts? ( $(ruby_implementations_depend) ) rmathlib? ( dev-lang/R ) tcmalloc? ( dev-util/google-perftools ) " @@ -37,7 +41,7 @@ DEPEND="${RDEPEND} dev-texlive/texlive-latexrecommended media-gfx/imagemagick ) - lto? ( >=sys-devel/gcc-4.8 ) + lto? ( >=sys-devel/gcc-4.8:* ) " pkg_pretend() { if use lto; then @@ -64,25 +68,25 @@ src_configure() { unset R_HOME if use rmathlib ; then - elog + echo elog "Using statistical routines from standalone Rmathlib." - elog + echo fi if use dreme ; then - elog + echo elog "Linking to DREME from the MEME suite." - elog + echo else - elog + echo elog "Not linking to DREME from the MEME suite (sci-biology/meme)." elog "You will not be able to use DREME to find seeds." - elog + echo fi if use doc ; then - elog + echo elog "User manual available at /usr/share/doc/discrover/discrover-manual.pdf" - elog + echo fi cmake-utils_src_configure diff --git a/sci-biology/discrover/discrover-9999.ebuild b/sci-biology/discrover/discrover-9999.ebuild index 34ce8c0..8131e9b 100644 --- a/sci-biology/discrover/discrover-9999.ebuild +++ b/sci-biology/discrover/discrover-9999.ebuild @@ -3,10 +3,15 @@ # $Header: $ EAPI=5 -inherit cmake-utils git-r3 + +USE_RUBY="ruby19" +RUBY_OPTIONAL=yes + +inherit cmake-utils git-r3 ruby-fakegem DESCRIPTION="A sequence motif discovery tool that uses discriminative learning" HOMEPAGE="https://github.com/maaskola/discrover"; +SRC_URI="" EGIT_REPO_URI="https://github.com/maaskola/${PN}"; LICENSE="GPL-3+" @@ -19,14 +24,14 @@ RDEPEND=" cairo? ( x11-libs/cairo ) dreme? ( sci-biology/meme ) tikzlogo? ( - dev-lang/ruby + $(ruby_implementations_depend) dev-texlive/texlive-latex dev-texlive/texlive-latexextra dev-tex/pgf dev-tex/xcolor media-gfx/imagemagick ) - misc_scripts? ( dev-lang/ruby ) + misc_scripts? ( $(ruby_implementations_depend) ) rmathlib? ( dev-lang/R ) tcmalloc? ( dev-util/google-perftools ) " @@ -37,7 +42,7 @@ DEPEND="${RDEPEND} dev-texlive/texlive-latexrecommended media-gfx/imagemagick ) - lto? ( >=sys-devel/gcc-4.8 ) + lto? ( >=sys-devel/gcc-4.8:* ) " pkg_pretend() { if use lto; then @@ -64,25 +69,25 @@ src_configure() { unset R_HOME if use rmathlib ; then - elog + echo elog "Using statistical routines from standalone Rmathlib." - elog + echo fi if use dreme ; then - elog + echo elog "Linking to DREME from the MEME suite." - elog + echo else - elog + echo elog "Not linking to DREME from the MEME suite (sci-biology/meme)." elog "You will not be able to use DREME to find seeds." - elog + echo fi if use doc ; then - elog + echo elog "User manual available at /usr/share/doc/discrover/discrover-manual.pdf" - elog + echo fi cmake-utils_src_configure diff --git a/sci-biology/discrover/metadata.xml b/sci-biology/discrover/metadata.xml index 0862889..6bfaf6c 100644 --- a/sci-biology/discrover/metadata.xml +++ b/sci-biology/discrover/metadata.xml @@ -1,28 +1,28 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> <pkgmetadata> - <maintainer> - <email>jo...@maaskola.de</email> - <name>Jonas Maaskola</name> - </maintainer> - <use> - <flag name="cairo"> + <maintainer> + <email>jo...@maaskola.de</email> + <name>Jonas Maaskola</name> + </maintainer> + <use> + <flag name="cairo"> Use Cairo for sequence logo plotting capabilities </flag> - <flag name="dreme"> + <flag name="dreme"> Enable usage of DREME from the MEME package for seeding </flag> - <flag name="lto"> + <flag name="lto"> Compile with link-time optimization (LTO) </flag> - <flag name="tikzlogo"> + <flag name="tikzlogo"> Enable LaTeX/TikZ based ruby script for sequence logo drawing </flag> - <flag name="misc_scripts"> + <flag name="misc_scripts"> Install miscellaneous scripts, e.g. for sequence length statistics </flag> - <flag name="rmathlib"> + <flag name="rmathlib"> Link to the standalone Rmathlib for statistical routines </flag> - </use> + </use> </pkgmetadata>
