commit: 0465f79fa2c23ea159ccc897cfa3720cd6e6afd2
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Feb 14 18:00:03 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Feb 14 18:00:03 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0465f79f
new python API
Package-Manager: portage-2.2.15
---
sci-biology/HTSeq/ChangeLog | 9 +++++++++
sci-biology/HTSeq/HTSeq-0.6.1.ebuild | 23 +++++++++++++++++++++++
sci-biology/HTSeq/metadata.xml | 9 +++++++++
3 files changed, 41 insertions(+)
diff --git a/sci-biology/HTSeq/ChangeLog b/sci-biology/HTSeq/ChangeLog
new file mode 100644
index 0000000..c9934fb
--- /dev/null
+++ b/sci-biology/HTSeq/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/HTSeq
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*HTSeq-0.6.1 (14 Feb 2015)
+
+ 14 Feb 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz>
+HTSeq-0.6.1.ebuild,
+ +metadata.xml:
+ new python API
diff --git a/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
b/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
new file mode 100644
index 0000000..a1eb736
--- /dev/null
+++ b/sci-biology/HTSeq/HTSeq-0.6.1.ebuild
@@ -0,0 +1,23 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+inherit distutils-r1
+
+DESCRIPTION="Use SAM/BAM/FASTA/Q/GFF/GTF files in python, count reads, genomic
intervals"
+HOMEPAGE="http://www-huber.embl.de/users/anders/HTSeq";
+SRC_URI="mirror://pypi/H/"${PN}"/"${P}".tar.gz"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND="dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ sci-biology/pysam[${PYTHON_USEDEP}]"
+RDEPEND="${DEPEND}"
diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/HTSeq/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokr...@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
