commit: 06b18fa7ff04d5abcc2f8d216d0162a068255a7b
Author: Jonas Maaskola <jonas <AT> maaskola <DOT> de>
AuthorDate: Tue Jan 27 22:40:43 2015 +0000
Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Jan 27 22:40:43 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=06b18fa7
sci-biology/discrover: bump package version, add USE flag for link-time
optimization, install doc to /usr/share/doc/${PF}
Package-Manager: portage-2.2.14
---
sci-biology/discrover/ChangeLog | 7 +++++++
.../{discrover-1.4.1.ebuild => discrover-1.5.2.ebuild} | 14 +++++++++++++-
sci-biology/discrover/discrover-9999.ebuild | 16 ++++++++++++++--
sci-biology/discrover/metadata.xml | 5 ++++-
4 files changed, 38 insertions(+), 4 deletions(-)
diff --git a/sci-biology/discrover/ChangeLog b/sci-biology/discrover/ChangeLog
index d81ca8c..fd6eb45 100644
--- a/sci-biology/discrover/ChangeLog
+++ b/sci-biology/discrover/ChangeLog
@@ -2,6 +2,13 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*discrover-1.5.2 (27 Jan 2015)
+
+ 27 Jan 2015; Jonas Maaskola <jo...@maaskola.de> +discrover-1.5.2.ebuild,
+ -discrover-1.4.1.ebuild, discrover-9999.ebuild, metadata.xml:
+ sci-biology/discrover: bump package version, add USE flag for link-time
+ optimization, install doc to /usr/share/doc/${PF}
+
*discrover-1.4.1 (05 Jan 2015)
05 Jan 2015; Jonas Maaskola <jo...@maaskola.de> +discrover-1.4.1.ebuild,
diff --git a/sci-biology/discrover/discrover-1.4.1.ebuild
b/sci-biology/discrover/discrover-1.5.2.ebuild
similarity index 74%
rename from sci-biology/discrover/discrover-1.4.1.ebuild
rename to sci-biology/discrover/discrover-1.5.2.ebuild
index 5ae256f..b17687e 100644
--- a/sci-biology/discrover/discrover-1.4.1.ebuild
+++ b/sci-biology/discrover/discrover-1.5.2.ebuild
@@ -12,7 +12,7 @@
SRC_URI="https://github.com/maaskola/discrover/archive/${PV}.tar.gz -> ${P}.tar.
LICENSE="GPL-3+"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE="+cairo dreme doc tikzlogo misc_scripts +rmathlib tcmalloc"
+IUSE="+cairo dreme doc +lto tikzlogo misc_scripts +rmathlib tcmalloc"
RDEPEND="
dev-libs/boost
@@ -37,16 +37,28 @@ DEPEND="${RDEPEND}
dev-texlive/texlive-latexrecommended
media-gfx/imagemagick
)
+ lto? ( >=sys-devel/gcc-4.8 )
"
+pkg_pretend() {
+ if use lto; then
+ if [[ $(gcc-major-version) -lt 4 ]] || ( [[
$(gcc-major-version) -eq 4 && $(gcc-minor-version) -lt 8 ]] ) ; then
+ eerror "Compilation with link-time optimization and GCC
older than 4.8 is not supported."
+ eerror "Please either disable the USE flag 'lto' or use
>=sys-devel/gcc-4.8."
+ die "Compiling with USE flag 'lto' is not supported
with <sys-devel/gcc-4.8."
+ fi
+ fi
+}
src_configure() {
local mycmakeargs=(
$(cmake-utils_use_with cairo CAIRO)
$(cmake-utils_use_with dreme DREME)
$(cmake-utils_use_with doc DOC)
+ $(cmake-utils_use_with lto LTO)
$(cmake-utils_use_with tikzlogo TIKZLOGO)
$(cmake-utils_use_with misc_scripts MISC_SCRIPTS)
$(cmake-utils_use_with rmathlib RMATHLIB)
$(cmake-utils_use_with tcmalloc TCMALLOC)
+ -DDOC_DIR="${EPREFIX}${PREFIX}/share/doc/${PF}"
)
unset R_HOME
diff --git a/sci-biology/discrover/discrover-9999.ebuild
b/sci-biology/discrover/discrover-9999.ebuild
index 5d3cf63..34ce8c0 100644
--- a/sci-biology/discrover/discrover-9999.ebuild
+++ b/sci-biology/discrover/discrover-9999.ebuild
@@ -3,7 +3,7 @@
# $Header: $
EAPI=5
-inherit cmake-utils git-2
+inherit cmake-utils git-r3
DESCRIPTION="A sequence motif discovery tool that uses discriminative learning"
HOMEPAGE="https://github.com/maaskola/discrover";
@@ -12,7 +12,7 @@ EGIT_REPO_URI="https://github.com/maaskola/${PN}";
LICENSE="GPL-3+"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE="+cairo dreme doc tikzlogo misc_scripts +rmathlib tcmalloc"
+IUSE="+cairo dreme doc +lto tikzlogo misc_scripts +rmathlib tcmalloc"
RDEPEND="
dev-libs/boost
@@ -37,16 +37,28 @@ DEPEND="${RDEPEND}
dev-texlive/texlive-latexrecommended
media-gfx/imagemagick
)
+ lto? ( >=sys-devel/gcc-4.8 )
"
+pkg_pretend() {
+ if use lto; then
+ if [[ $(gcc-major-version) -lt 4 ]] || ( [[
$(gcc-major-version) -eq 4 && $(gcc-minor-version) -lt 8 ]] ) ; then
+ eerror "Compilation with link-time optimization and GCC
older than 4.8 is not supported."
+ eerror "Please either disable the USE flag 'lto' or use
>=sys-devel/gcc-4.8."
+ die "Compiling with USE flag 'lto' is not supported
with <sys-devel/gcc-4.8."
+ fi
+ fi
+}
src_configure() {
local mycmakeargs=(
$(cmake-utils_use_with cairo CAIRO)
$(cmake-utils_use_with dreme DREME)
$(cmake-utils_use_with doc DOC)
+ $(cmake-utils_use_with lto LTO)
$(cmake-utils_use_with tikzlogo TIKZLOGO)
$(cmake-utils_use_with misc_scripts MISC_SCRIPTS)
$(cmake-utils_use_with rmathlib RMATHLIB)
$(cmake-utils_use_with tcmalloc TCMALLOC)
+ -DDOC_DIR="${EPREFIX}${PREFIX}/share/doc/${PF}"
)
unset R_HOME
diff --git a/sci-biology/discrover/metadata.xml
b/sci-biology/discrover/metadata.xml
index 24958c9..0862889 100644
--- a/sci-biology/discrover/metadata.xml
+++ b/sci-biology/discrover/metadata.xml
@@ -10,7 +10,10 @@
Use Cairo for sequence logo plotting capabilities
</flag>
<flag name="dreme">
- Allow to use DREME from the MEME package for seeding
+ Enable usage of DREME from the MEME package for seeding
+ </flag>
+ <flag name="lto">
+ Compile with link-time optimization (LTO)
</flag>
<flag name="tikzlogo">
Enable LaTeX/TikZ based ruby script for sequence logo
drawing
