commit: 24345bb7834073b0027c28b890a36ed5ffd35a12 Author: Sam James <sam <AT> gentoo <DOT> org> AuthorDate: Sat Jul 2 23:38:32 2022 +0000 Commit: Sam James <sam <AT> gentoo <DOT> org> CommitDate: Sat Jul 2 23:38:32 2022 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=24345bb7
sci-biology/trnascan-se: update EAPI 6 -> 8 Closes: https://bugs.gentoo.org/710970 Signed-off-by: Sam James <sam <AT> gentoo.org> sci-biology/trnascan-se/trnascan-se-1.31-r1.ebuild | 53 ++++++++++++++++++++++ 1 file changed, 53 insertions(+) diff --git a/sci-biology/trnascan-se/trnascan-se-1.31-r1.ebuild b/sci-biology/trnascan-se/trnascan-se-1.31-r1.ebuild new file mode 100644 index 000000000000..cbbcb5f0e11e --- /dev/null +++ b/sci-biology/trnascan-se/trnascan-se-1.31-r1.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit perl-functions toolchain-funcs + +DESCRIPTION="tRNA detection in large-scale genome sequences" +HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/"; +SRC_URI="http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> ${P}.tar.gz" +S="${WORKDIR}"/tRNAscan-SE-1.3.1/ + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +PATCHES=( + "${FILESDIR}"/${P}-ldflags.patch +) + +src_prepare() { + default + + sed \ + -e "s:BINDIR = \$(HOME)/bin:BINDIR = ${EPREFIX}/usr/bin:" \ + -e "s:LIBDIR = \$(HOME)/lib/tRNAscan-SE:LIBDIR = ${EPRFIX}/usr/share/${PN}:" \ + -e "s:MANDIR = \$(HOME)/man:MANDIR = ${EPREFIX}/usr/share/man:" \ + -e "s:CC = gcc:CC = $(tc-getCC):" \ + -e "s;CFLAGS = -O;CFLAGS = ${CFLAGS};" \ + -i Makefile || die + + perl_set_version +} + +src_test() { + emake PATH="${S}:${PATH}" testrun +} + +src_install() { + dobin covels-SE coves-SE eufindtRNA tRNAscan-SE trnascan-1.4 + + newman tRNAscan-SE.man tRNAscan-SE.man.1 + + dodoc MANUAL README Release.history + + insinto /usr/share/${PN}/ + doins *.cm gcode.* Dsignal TPCsignal + + dodoc Manual.ps + + insinto ${VENDOR_LIB} + doins -r tRNAscanSE +}
