commit: dc7beed7f021c6afe109a71cd67a3cf014538a57 Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Sat Feb 19 14:05:07 2022 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Sat Feb 19 14:05:12 2022 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=dc7beed7
sci-biology/vcftools: add version 0.1.16 Closes: https://bugs.gentoo.org/833503 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> sci-biology/vcftools/Manifest | 1 + sci-biology/vcftools/vcftools-0.1.16.ebuild | 37 +++++++++++++++++++++++++++++ 2 files changed, 38 insertions(+) diff --git a/sci-biology/vcftools/Manifest b/sci-biology/vcftools/Manifest index d54587b1a971..411610b28376 100644 --- a/sci-biology/vcftools/Manifest +++ b/sci-biology/vcftools/Manifest @@ -1 +1,2 @@ DIST vcftools-0.1.14.tar.gz 342369 BLAKE2B 14be867c0be41767e2c97c8be212f3cff495c1cb6699294fb8a26ac491901599cd1e400cb80c6d609dce36584ee5defdb3b3652657bd127e0c67c5b29a842cc5 SHA512 863a16b3b20d392deba7f04310af95f1ab21be537273692aa104e22d737af2eb1bc54a768af954f06188e0500e4f7a032d1189886eb3a439b108cb8189b14eb7 +DIST vcftools-0.1.16.tar.gz 480575 BLAKE2B 5c0bf67aef8ef4705f621485df4c556f6bace190311c308f0364f3e274cf4818f56f2186905fdfb7459dc4be9664a8b1ff631e2cecd03abd7aa82dcfc7e5aa64 SHA512 c4dd5ceb3ad0512e839154d8a05ef3e7a03cbe52c3099df48775b35460fce7ef10102819c2d1cefa33b98ad09e7bd1608e871978860ec9c0b0c2e781892b22e6 diff --git a/sci-biology/vcftools/vcftools-0.1.16.ebuild b/sci-biology/vcftools/vcftools-0.1.16.ebuild new file mode 100644 index 000000000000..b06a81dd0a1a --- /dev/null +++ b/sci-biology/vcftools/vcftools-0.1.16.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit autotools flag-o-matic perl-functions toolchain-funcs + +DESCRIPTION="Tools for working with VCF (Variant Call Format) files" +HOMEPAGE="http://vcftools.sourceforge.net/"; +SRC_URI="https://github.com/${PN}/${PN}/releases/download/v${PV}/${P}.tar.gz"; + +LICENSE="LGPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="lapack" + +RDEPEND="sys-libs/zlib + dev-lang/perl:= + lapack? ( virtual/lapack )" +DEPEND="${RDEPEND}" +BDEPEND="virtual/pkgconfig" + +src_prepare() { + default + eautoreconf +} + +src_configure() { + perl_set_version + + append-flags $($(tc-getPKG_CONFIG) --cflags lapack) + append-libs $($(tc-getPKG_CONFIG) --libs lapack) + + econf \ + $(use_enable lapack pca) \ + --with-pmdir="${VENDOR_LIB#${EPREFIX}/usr}" +}
