commit: 85ea7cd26bde63d5c0b0157bb2f10214006aec89 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Sat Mar 6 16:09:45 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Sat Mar 6 16:09:45 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=85ea7cd2
sci-biology/verifyBamID: EAPI bump, bump libStatGen version fixes build failure Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> sci-biology/verifyBamID/verifyBamID-1.1.3.ebuild | 21 ++++++++++----------- 1 file changed, 10 insertions(+), 11 deletions(-) diff --git a/sci-biology/verifyBamID/verifyBamID-1.1.3.ebuild b/sci-biology/verifyBamID/verifyBamID-1.1.3.ebuild index 040816a76..2a6759c54 100644 --- a/sci-biology/verifyBamID/verifyBamID-1.1.3.ebuild +++ b/sci-biology/verifyBamID/verifyBamID-1.1.3.ebuild @@ -1,19 +1,18 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 inherit toolchain-funcs DESCRIPTION="Verify sample identity/mix and genotype concordance" HOMEPAGE="http://genome.sph.umich.edu/wiki/VerifyBamID"; -SRC_URI="https://github.com/statgen/verifyBamID/archive/v1.1.3.tar.gz -> ${P}.tar.gz - https://github.com/statgen/libStatGen/archive/v1.0.13.tar.gz -> libStatGen-1.0.13.tar.gz" +SRC_URI="https://github.com/statgen/verifyBamID/archive/v${PV}.tar.gz -> ${P}.tar.gz + https://github.com/statgen/libStatGen/archive/v1.0.15.tar.gz -> libStatGen-1.0.15.tar.gz" LICENSE="GPL-3+" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="" # DEPEND="sci-libs/libStatGen" # TODO: currently it uses its own bundled copy DEPEND="" @@ -21,18 +20,18 @@ RDEPEND="${DEPEND}" src_prepare(){ # unpack ./libStatGen-1.0.13/ contents - gzip -dc "${DISTDIR}"/libStatGen-1.0.13.tar.gz | tar xf - || die - ln -s libStatGen-1.0.13 libStatGen || die + gzip -dc "${DISTDIR}"/libStatGen-1.0.15.tar.gz | tar xf - || die + ln -s libStatGen-1.0.15 libStatGen || die cd "${WORKDIR}" || die - ln -s libStatGen-1.0.13 libStatGen || die + ln -s libStatGen-1.0.15 libStatGen || die sed -e 's/-Werror//' -i verifyBamID-1.1.3/src/Makefile || die - sed -e 's/-Werror//' -i verifyBamID-1.1.3/libStatGen-1.0.13/general/Makefile || die - eapply_user + sed -e 's/-Werror//' -i verifyBamID-1.1.3/libStatGen-1.0.15/general/Makefile || die + default } src_compile(){ # LIB_PATH_GENERAL="${EPREFIX}"/usr/"$(get_libdir)" emake - LIB_PATH_GENERAL="../libStatGen-1.0.13" emake USER_WARNINGS=' ' + LIB_PATH_GENERAL="../libStatGen-1.0.15" emake USER_WARNINGS=' ' } src_install(){
