commit: ab0138b5b38bb3d6b7ef839f590325bb4acb2d6b Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Sat Mar 6 13:35:27 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Sat Mar 6 13:35:27 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ab0138b5
sci-biology/quorum: EAPI bump, fix build Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> sci-biology/quorum/quorum-1.1.1.ebuild | 12 +++++++++--- 1 file changed, 9 insertions(+), 3 deletions(-) diff --git a/sci-biology/quorum/quorum-1.1.1.ebuild b/sci-biology/quorum/quorum-1.1.1.ebuild index 6fa222ff7..4af286fcb 100644 --- a/sci-biology/quorum/quorum-1.1.1.ebuild +++ b/sci-biology/quorum/quorum-1.1.1.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 DESCRIPTION="Correct substitution errors in Illumina reads" HOMEPAGE="http://www.genome.umd.edu/quorum.html @@ -11,11 +11,17 @@ SRC_URI="https://github.com/gmarcais/Quorum/releases/download/v${PV}/${P}.tar.gz LICENSE="GPL-3" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="" DEPEND=">=sci-biology/jellyfish-2.1.4:2" RDEPEND="${DEPEND}" +src_prepare() { + default + # fix jellyfish include path + find -type f -name "*.cc" -exec sed -i -e 's/<jellyfish\//<jellyfish2\//g' {} + || die + find -type f -name "*.hpp" -exec sed -i -e 's/<jellyfish\//<jellyfish2\//g' {} + || die +} + src_configure(){ econf --enable-relative-paths --with-relative-jf-path default
