commit: e45541df91e0f201695648836bd4b480568c9da4 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Sat Mar 6 09:42:33 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Sat Mar 6 09:42:33 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e45541df
sci-biology/bismark: version bump 0.23.0, EAPI bump Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> sci-biology/bismark/bismark-0.23.0.ebuild | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/sci-biology/bismark/bismark-0.23.0.ebuild b/sci-biology/bismark/bismark-0.23.0.ebuild new file mode 100644 index 000000000..0a59fbb15 --- /dev/null +++ b/sci-biology/bismark/bismark-0.23.0.ebuild @@ -0,0 +1,27 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit toolchain-funcs + +DESCRIPTION="Map bisulfite converted sequence reads and cytosine methylation states" +HOMEPAGE="https://www.bioinformatics.babraham.ac.uk/projects/"; +SRC_URI="https://github.com/FelixKrueger/Bismark/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="sci-biology/bowtie" + +S="${WORKDIR}/${P^}" + +src_install() { + dobin \ + bismark{,2bedGraph,2report,_genome_preparation,_methylation_extractor} \ + coverage2cytosine deduplicate_bismark + einstalldocs + dodoc -r Docs +}
