commit: f7cc66277e7d229e6e5d971461d15fea72365e45 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Thu Feb 4 10:49:42 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Thu Feb 4 10:49:42 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f7cc6627
licenses: remove unused licenses Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> licenses/mddnmr | 39 -------------- licenses/stampy-academic | 22 -------- licenses/unio | 133 ----------------------------------------------- 3 files changed, 194 deletions(-) diff --git a/licenses/mddnmr b/licenses/mddnmr deleted file mode 100644 index dd5c9e910..000000000 --- a/licenses/mddnmr +++ /dev/null @@ -1,39 +0,0 @@ -Copyright and Legal Information - -Copyright (C) V. Orekhov, V. Jaravine, M. Mayzel, K. Kazimierczuk, Swedish NMR Center, University of Gothenburg, 2004-2011. - -Date: Jul 3, 2011 - -DESCRIPTION -MddNMR is a program for processing uniformly and non-uniformly sampled (sparse) NMR spectra. -The following is legal information pertaining to the use of the MddNMR program. It applies to all MddNMR source files, executable (binary) files, configuration and documentation files contained in the official MddNMR archives. (Certain portions refer to custom versions of the software, there are specific rules listed below for these versions also.) All of these are referred to here as "the software". - -THIS NOTICE MUST ACCOMPANY ALL OFFICIAL OR CUSTOM MddNMR FILES. IT MAY NOT BE REMOVED OR MODIFIED. THIS INFORMATION PERTAINS TO ALL USE OF THE PACKAGE WORLDWIDE. THIS DOCUMENT SUPERSEDES ALL PREVIOUS LICENSES OR DISTRIBUTION POLICIES. - -IMPORTANT LEGAL INFORMATION -While the use MddNMR is essentially free of any costs for noncommercial purposes, commercial users and software developers, who wish to bundle MddNMR with other software, will be asked for support of the research and development of MddNMR. For commercial purposes of MddNMR please contact the copyright holders. Permission is granted to use the MddNMR program and all associated files in this package for making calculations. Use of the software for academic and educational purposes is free. The user retains all rights to the results and may use them for any noncommercial purpose. The following legal information exclusively concerns distribution and use of the software for noncommercial purposes. - -When results obtained by MddNMR are used in lectures, publications or other similar occasions, then a reference to the authors and at least one of the following papers is to be made: -(1) Orekhov, V.Y. and V.A. Jaravine, Analysis of non-?uniformly sampled spectra with Multi-?Dimensional Decomposition. Prog. Nucl. Magn. Reson. Spectrosc., 2011, in press, doi:10.1016/j.pnmrs.2011.02.002 - -(2) Kazimierczuk, K. and V.Y. Orekhov, Accelerated NMR Spectroscopy by Using Compressed Sensing. Angew. Chem.-Int. Edit., 2011, 123, 5670-3 - - -This software package and all of the files in this archive are copyrighted by the authors, which are represented by Prof. Vladislav Orekhov for distribution, copyright and other legal issues (VO). The software may only be distributed and/or modified according to the guidelines listed below. The spirit of the guidelines below is to provide the MddNMR package freely to as many users as possible, prevent MddNMR users and developers from being taken advantage of, enhance the life quality of those who come in contact with MddNMR. This legal document was created so these goals could be realized. You are legally bound to follow these rules, but we hope you will follow them as a matter of ethics, rather than fear of litigation. - -No portion of this package may be separated from the package and distributed separately other than under the conditions specified in the guidelines below. This package may only be bundled in other software packages with the explicit permission of the copyright holders. This package may only be posted in the Internet and/or included in software compilations using media such as, but not limited to, floppy disk, CD-ROM, tape backup, optical disks, hard disks, or memory cards with the explicit permission of the copyright holders. - -CUSTOM VERSIONS -With a separate agreement a user may be granted the privilege to modify and compile the source for their own use in any fashion they see fit. What you do with the software in your home or lab is your business, however, in such cases the activity is usually limited by the agreement or defined by the collaborative project. If the user wishes to distribute a modified version of the software, documentation or other parts of the package (here after referred to as a "custom version") they must follow the guidelines listed below. These guidelines have been established to promote the growth of MddNMR and prevent difficulties for users and developers alike. Please follow them carefully for the benefit of all concerned when creating a custom version. You may not incorporate any portion of the MddNMR source code in any software other than a custom version of MddNMR without the explicit permission of the copyright holders. However authors who contribute source to MddNMR may still retain all rig hts to use their contributed code for any purpose as described below. The user is encouraged to send enhancements and bug fixes to the MddNMR authors, but the authors are in no way required to utilize these enhancements or fixes. By sending material to the authors, the contributor asserts that he owns the materials or has the right to distribute these materials. He authorizes the MddNMR authors to use the materials any way they like. The contributor still retains rights to the donated material, but by donating you grant equal rights to the MddNMR authors. The MddNMR authors don't have to use the material, but if we do, you do not acquire any rights related to MddNMR. We will give you credit if applicable. - -CONDITIONS FOR DISTRIBUTION OF CUSTOM VERSIONS -The permission to distribute compiled custom version of the software may be granted in advance with specific permission from VO. Typical conditions include but not limited to following conditions are met. These conditions also apply to custom documentation based on our files. - Mark your version clearly on all modified files stating this to be a modified and unofficial version. - Make all of your modifications to MddNMR freely and publicly available. - Include clear and obvious information on how to obtain the official MddNMR. - Include contact and support information for your version. - Include all credits and credit screens for the official version. - Include a copy of this document. The MddNMR authors are not obligated to provide you or your users any technical support. - -GENERAL RULES FOR ALL DISTRIBUTION -All requests to acquire the software should be sent to VO, who normally distributes the software on behalf of all co-authors. The permission to distribute this package under certain very specific conditions is granted in advance to other persons or organizations, provided that the above and following conditions are met. The software archives must not be renamed or re-archived using a different method without the explicit permission of the authors. The full software package, as described in the next section, must always be distributed. All forms of commercial and non-profit distribution are only allowed with explicit permission of the copyright holders represented by VO. Clear reference to the copyright holders (at least to VO) must be present in any description/synopsis of software. The copyright holders reserve the right to withdraw distribution privileges from any group, individual, or organization for any reason. - -DEFINITION OF "MddNMR PACKAGE" MddNMR is distributed as a number of archive containing executables, installation scripts, examples, and documentation. MddNMR is officially distributed for PC (LINUX) and Intel MAC (OS X 10.6 and later). Other systems may be added in the future. Distributors may support different platforms but for each platform they support the full package must be distributed. - -DISCLAIMER -This software is provided as is without any guarantees or warranty. Although the authors have attempted to find and correct any bugs in the package, they are not responsible for any damage or losses of any kind caused by the use or misuse of the package. The authors are under no obligation to provide service, corrections, or upgrades to this package. -[End of Legal Information] diff --git a/licenses/stampy-academic b/licenses/stampy-academic deleted file mode 100644 index 31eaa61b6..000000000 --- a/licenses/stampy-academic +++ /dev/null @@ -1,22 +0,0 @@ -This is a release version. Permission is granted for the normal -use of the program and its output in an academic setting, including -in publications. If the program is used to generate data for a -publication, please cite this paper: - - G. Lunter and M. Goodson. Stampy: A statistical algorithm for - sensitive and fast mapping of Illumina sequence reads. Genome - Res. 2011 21:936-939. - -The program itself may not be modified in any way, and may not be -reverse-engineered. - -This license does not allow the use of this program for any -commercial purpose. If you wish to use this program for commercial -purposes, please contact the author. - -No guarantees are given as to the program's correctness, or the -accuracy or completeness of its output. The author accepts no -liability for damage or otherwise following from using and -interpreting the output of this program. The software is supplied -"as is", without obligation by the author to provide any services -or support. diff --git a/licenses/unio b/licenses/unio deleted file mode 100644 index 55b34fa4a..000000000 --- a/licenses/unio +++ /dev/null @@ -1,133 +0,0 @@ -This legal document has to accompany all official or custom UNIO files. It may not be -removed or modified. This document pertains to all use of the software package -worldwide. This document supersedes all previous licenses or distribution policies. -Contract for license of software -between - -ETH Zurich -Represented by Kurt Wüthrich -(licensor) - -and - -the licensee - -1. Definition of the Software -UNIO is a software package for automated NMR data analysis. It provides the -functionalities of the four existing algorithms: MATCH, for automated backbone -assignment, ASCAN, for automated side-chain assignment, ATNOS, for automated -peak picking and NOE identification in 2D homonuclear and 3D heteronuclear- -resolved NOESY spectra, and CANDID, for automated NOE assignment of NOESY -cross peaks in conjunction with protein three-dimensional structure calculation. -Details are to learn from the following publications: -Herrmann, T., Güntert, P. & Wüthrich, K. -"Protein NMR structure determination with automated NOE-identification in the NOESY spectra using the new -software ATNOS." -J. Biomol. NMR 2002 Nov; 24(3): 171-189. -Herrmann, T., Güntert, P. & Wüthrich, K. -"Protein NMR structure determination with automated NOE assignment using the new software CANDID and the -torsion angle dynamics algorithm DYANA." -J. Mol. Biol. 2002 May; 319(1): 209-227. -Volk, J.; Herrmann, T.; Wüthrich, K. -“Automated sequence-specific protein NMR assignment using the memetic algorithm MATCH.” -J. Biomol.NMR. 2008, 41, 127-138. -Fiorito, F.; Damberger, F.F.; Herrmann, T.; Wüthrich, K. -“Automated amino acid side-chain assignment of proteins using 13C- and 15N resolved 3D [1H, 1H]-NOESY.” -J. Biomol. NMR 2008, 42, 23-33. -This Software is composed of 3 types of files: executable (binary) files, configuration -files and documentation files. Not included is the source code. -(together “Software”) -2. License of ETH Zurich -ETH Zurich hereby grants a single, non-exclusive, world-wide, royalty-free license to -use Software subject to all the terms and conditions of this Contract to the licensee. -3. The scope of the license -a. Use -The Software may be used exclusively for research purposes in academic -institutions. The licensee retains all rights to results from such use. -Only the use for non-commercial purposes is allowed. Prohibited is for example: -i. selling, licensing or renting the Software to third parties for a fee, payment of -money or other compensation -ii. -using the Software to provide services or products to others for which the -licensee is compensated in any manner (by payment of money or otherwise), -including providing support or maintenance for the Software -iii. -using the Software to develop a similar application on any platform for -commercial distribution. -b. Reproduction -Reproduction is prohibited except for the provisions of the applicable law (article 21 -URG [Bundesgesetz über das Urheberrecht, SR 231.1]). -c. Modification -Neither modification, combination with other commercial applications or other -preparation of derivative works of the Software, nor reverse engeneering, -decompilation, disassembly or other reduction of any portion of the Software is -permitted except for the provisions of the applicable law (article 21 URG -[Bundesgesetz über das Urheberrecht, SR 231.1]). -d. Distribution -Assignment to a third party is prohibited. -4. Obligations of licensee -a. Use -Any report or publication of results obtained by the Software has to be acknowledged -by citing the following four publications: -Herrmann, T., Güntert, P. & Wüthrich, K. -"Protein NMR structure determination with automated NOE-identification in the NOESY spectra using the new -software ATNOS." -J. Biomol. NMR 2002 Nov; 24(3): 171-189. -Herrmann, T., Güntert, P. & Wüthrich, K. -"Protein NMR structure determination with automated NOE assignment using the new software CANDID and the -torsion angle dynamics algorithm DYANA." -J. Mol. Biol. 2002 May; 319(1): 209-227. -Volk, J.; Herrmann, T.; Wüthrich, K. -“Automated sequence-specific protein NMR assignment using the memetic algorithm MATCH.” -J. Biomol.NMR. 2008, 41, 127-138. -Fiorito, F.; Damberger, F.F.; Herrmann, T.; Wüthrich, K. -“Automated amino acid side-chain assignment of proteins using 13C- and 15N resolved 3D [1H, 1H]-NOESY.” -J. Biomol. NMR 2008, 42, 23-33. -b. Modification -Reports of modifications or derivative works are to be made to ETH Zurich, and are -to be made available on request. -5. Intellectual property and other rights -Ownership and intellectual property rights in and to the Software shall remain in ETH -Zurich. ETH Zurich reserves the right to withdraw distribution privileges from any group, -individual, or organization for any reason. -6. Maintenance, support, upgrades or new releases -ETH Zurich doesn’t have any obligation of maintenance, support, upgrades or new -releases and disclaims all costs associated with serving, repair or correction. -7. Warranty -The Software is provided “as is”. ETH Zurich does not make any warranty of any -kind. Disclaimed warranties include for example: -i. warranty of merchantability, satisfactory quality and fitness for a particular -purpose -ii. -warranty of accuracy of results, of the quality and performance of the Software -iii. -warranty of noninfringement of the intellectual property rights of third parties. -8. Liability -ETH Zurich disclaims all liabilities. ETH Zurich shall not have any liability for any -direct or indirect damage except for the provisions of the applicable law (article 100 -OR [Schweizerisches Obligationenrecht]). -9. Termination -This Contract may be terminated by ETH Zurich at any time. On termination all -copies of the Software has to be destroyed. -10. Severability -If any provisions of this Contract will become invalid or unenforceable, such invalidity -or enforceability shall not affect the other provisions of Contract which shall remain in -full force and effect provided that the basic intent of the parties is preserved. The -parties will in good faith negotiate substitute provisions to replace invalid or -unenforceable provisions which reflect the orginal intentions of the parties as closely -as possible and maintain the economic balance between the parties. -11. Applicable law -This Contract as well as any and all matters arising out of it shall exclusively be -governed by and interpreted in accordance with the laws of Switzerland, excluding its -principles of conflict of laws. -12. Jurisdiction -If any dispute, controversy or difference arises between the Parties hereto in -connection with or out of this Contract, the parties hereto shall first attempt to settle it -amicably. -Should settlement not be achieved, the Courts of Zurich-City shall have exclusive -jurisdiction. -By using this software you indicate your acceptance. -For commercial use of the Software please contact torsten.herrm...@ens-lyon.fr. -In case of any problems, comments, questions, please contact the UNIO authors -using the E-mail address torsten.herrm...@ens-lyon.fr -
