commit: 843b1f675001ddf24cf56c5b0e9dcd3680111cef
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sun Jan 24 13:51:53 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sun Jan 24 13:54:11 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=843b1f67
sci-biology/SnpEff: fix install
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/SnpEff/SnpEff-4.3t.ebuild | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/sci-biology/SnpEff/SnpEff-4.3t.ebuild
b/sci-biology/SnpEff/SnpEff-4.3t.ebuild
index ddece0256..843c00356 100644
--- a/sci-biology/SnpEff/SnpEff-4.3t.ebuild
+++ b/sci-biology/SnpEff/SnpEff-4.3t.ebuild
@@ -13,7 +13,7 @@ SRC_URI="
LICENSE="LGPL-3"
SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64"
RDEPEND="
>=virtual/jre-1.7:*
@@ -31,8 +31,8 @@ src_install(){
mkdir -p "${ED}"/usr/share || die
# but portage does not install the .* files and subdirs, grr!
unzip \
- "${DISTDIR}"/snpEff_v"${MY_PV}"_core.zip -d "${ED}"/usr/share \
- || die "failed to unzip ${DISTDIR}/snpEff_v${MY_PV}_core.zip"
+ "${DISTDIR}"/snpEff_v"${PV//./_}"_core.zip -d "${ED}"/usr/share
\
+ || die "failed to unzip ${DISTDIR}/snpEff_v${PV//./_}_core.zip"
sed \
-e "s#$HOME/tools/picard/#${ED}/usr/share/picard/lib/#" \
-i "${ED}"/usr/share/snpEff/scripts/annotate_demo_GATK.sh || die
