commit: d652cfed793983d85a41dc9314f8ecbd11579b07 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Tue Jan 19 14:14:22 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Tue Jan 19 14:14:22 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d652cfed
sci-biology/ePCR: remove pack, upstream says use PrimerBLAST instead Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> profiles/package.mask | 1 - sci-biology/ePCR/ePCR-2.3.12.ebuild | 33 --------------------------------- sci-biology/ePCR/files/config.mk.patch | 18 ------------------ sci-biology/ePCR/metadata.xml | 12 ------------ 4 files changed, 64 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 37fdc49bb..01dfb9327 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -55,4 +55,3 @@ sci-biology/cross_genome sci-biology/dawg sci-biology/EBARDenovo sci-biology/ensembl-tools -sci-biology/ePCR diff --git a/sci-biology/ePCR/ePCR-2.3.12.ebuild b/sci-biology/ePCR/ePCR-2.3.12.ebuild deleted file mode 100644 index ce500a659..000000000 --- a/sci-biology/ePCR/ePCR-2.3.12.ebuild +++ /dev/null @@ -1,33 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit eutils - -DESCRIPTION="Search for sub-sequences matching PCR primers" -HOMEPAGE="https://www.ncbi.nlm.nih.gov/tools/epcr/"; -SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/pub/schuler/e-PCR/e-PCR-"${PV}"-src.tar.gz"; - -LICENSE="public-domain" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND="" -RDEPEND="${DEPEND}" - -S=${WORKDIR}"/e-PCR-"${PV} - -src_prepare(){ - epatch "${FILESDIR}"/config.mk.patch -} - -src_compile(){ - emake -j1 srcdir="${S}" objdir="${S}" -} - -src_install(){ - dobin e-PCR famap fahash re-PCR - dodoc README.TXT -} diff --git a/sci-biology/ePCR/files/config.mk.patch b/sci-biology/ePCR/files/config.mk.patch deleted file mode 100644 index 1960b43f7..000000000 --- a/sci-biology/ePCR/files/config.mk.patch +++ /dev/null @@ -1,18 +0,0 @@ ---- stand/config.mk.ori 2012-01-16 17:38:11.000000000 +0100 -+++ stand/config.mk 2012-01-16 17:39:12.000000000 +0100 -@@ -52,11 +52,11 @@ - - ######################################################################### - # GNU compiler flags --CC = gcc --CXX = g++ --CXXFLAGS = -I$(srcdir) -I$(INCDIR) $(CC_FLAGS) $(PART_CXXFLAGS) \ -+#CC = gcc -+#CXX = g++ -+CXXFLAGS = -I$(srcdir) -I$(INCDIR) -I`pwd` \ - -DDEALLOCATE=0 $(LF64CCFLAGS) $(VERSION_FLAGS) -DSTANDALONE=1 --LDFLAGS = $(LD_FLAGS) $(LF64LDFLAGS) -L$(tgtdir) -L$(LIBDIR) $(PART_LDFLAGS) -+LDFLAGS = $(LF64LDFLAGS) -L$(tgtdir) -L$(LIBDIR) - # $(PART_PRELIBS) $(LIBS:%=-l%) $(PART_POSTLIBS) - - LF64CCFLAGS = `getconf LFS_CFLAGS` diff --git a/sci-biology/ePCR/metadata.xml b/sci-biology/ePCR/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/ePCR/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata>
