commit: f7b9dacac004dc76d69a9b619f77963a5f83ca17 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Wed Jan 13 20:17:55 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Wed Jan 13 20:17:55 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f7b9daca
sci-biology/blasr: add dep on libblasr Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> sci-biology/blasr/blasr-9999.ebuild | 43 +++++++++---------------------------- 1 file changed, 10 insertions(+), 33 deletions(-) diff --git a/sci-biology/blasr/blasr-9999.ebuild b/sci-biology/blasr/blasr-9999.ebuild index 3fe868450..6f5d10b16 100644 --- a/sci-biology/blasr/blasr-9999.ebuild +++ b/sci-biology/blasr/blasr-9999.ebuild @@ -1,49 +1,26 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -inherit git-r3 +inherit meson git-r3 DESCRIPTION="The PacBio long read aligner" HOMEPAGE="http://www.smrtcommunity.com/SMRT-Analysis/Algorithms/BLASR"; -#SRC_URI="https://github.com/PacificBiosciences/blasr/tarball/${PV} -> ${P}.tar.gz" -SRC_URI="" EGIT_REPO_URI="https://github.com/PacificBiosciences/blasr.git"; +#SRC_URI="https://github.com/PacificBiosciences/blasr/tarball/${PV} -> ${P}.tar.gz" LICENSE="blasr" SLOT="0" -IUSE="hdf5" KEYWORDS="" -CDEPEND=" - dev-util/meson - dev-util/ninja +BDEPEND=" dev-util/cmake - dev-util/pkgconfig" -# needs libblasr + virtual/pkgconfig +" DEPEND=" sci-biology/pbbam + sci-biology/libblasr dev-libs/boost:=[threads] - hdf5? ( >=sci-libs/hdf5-1.8.12[cxx] )" # needs H5Cpp.h -RDEPEND="" - -S="${WORKDIR}/blasr-9999" - -#src_configure(){ -# if use hdf5; then \ -# python ./configure.py --shared --sub --no-pbbam HDF5_INCLUDE="${EPREFIX}"/usr/include HDF5_LIB="${EPREFIX}"/usr/lib64 || die -# else -# python ./configure.py --shared --sub --no-pbbam || die -# fi -#} - -src_compile(){ - bash scripts/ci/build.sh || die - # BUG: meson.build:54:0: ERROR: Dependency "pbbam" not found, tried pkgconfig and cmake -} - -src_install() { - dodir /usr/bin - emake install ASSEMBLY_HOME="${ED}/usr" -} +" +RDEPEND="${DEPEND}"
