commit: 9ae44cc31398e49952ae8c2d92885c916e5538c6
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 5 10:03:56 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 5 18:20:18 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9ae44cc3
sci-biology/ncbi-blast+: depend on gcc<10, add 2.11.0 version
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
.../{ncbi-blast+-2.8.1.ebuild => ncbi-blast+-2.11.0.ebuild} | 9 +++++----
sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild | 5 +++--
sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild | 5 +++--
sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild | 5 +++--
sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild | 5 +++--
5 files changed, 17 insertions(+), 12 deletions(-)
diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild
b/sci-biology/ncbi-blast+/ncbi-blast+-2.11.0.ebuild
similarity index 99%
copy from sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild
copy to sci-biology/ncbi-blast+/ncbi-blast+-2.11.0.ebuild
index ca3e682ac..12b249c8b 100644
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.11.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
-PYTHON_COMPAT=( python2_7 )
+PYTHON_COMPAT=( python3_{7,8,9} )
inherit eutils flag-o-matic multilib python-single-r1 toolchain-funcs
@@ -28,13 +28,14 @@ IUSE="
berkdb boost bzip2 cppunit curl expat fltk freetype gif
glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python
sablotron sqlite tiff xerces xalan xml xpm xslt X"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 ~x86"
#KEYWORDS=""
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
# sys-libs/db should be compiled with USE=cxx
DEPEND="
+ <sys-devel/gcc-10:=
!sci-biology/ncbi-tools++
!sci-biology/sra_sdk
berkdb? ( sys-libs/db:4.3[cxx] )
@@ -77,7 +78,7 @@ DEPEND="
# seems muParser is required, also glew is required. configure exits otherwise
if these are explicitly passed to it (due to USE flag enabled)
-RDEPEND="${DEPEND}"
+RDEPEND="${BDEPEND}"
S="${WORKDIR}/${MY_P}/c++"
# ncbi-blast-2.2.30+-src/c++
diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild
b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild
index d6c529b57..85b764cc4 100644
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -27,13 +27,14 @@ IUSE="
berkdb boost bzip2 cppunit curl expat fltk freetype gif
glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python
sablotron sqlite tiff xerces xalan xml xpm xslt X"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 ~x86"
#KEYWORDS=""
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
# sys-libs/db should be compiled with USE=cxx
DEPEND="
+ <sys-devel/gcc-10:=
!sci-biology/ncbi-tools++
!sci-biology/sra_sdk
berkdb? ( sys-libs/db:4.3[cxx] )
diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild
b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild
index 40d060bf5..7709cab39 100644
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -27,13 +27,14 @@ IUSE="
berkdb boost bzip2 cppunit curl expat fltk freetype gif
glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python
sablotron sqlite tiff xerces xalan xml xpm xslt X"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 ~x86"
#KEYWORDS=""
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
# sys-libs/db should be compiled with USE=cxx
DEPEND="
+ <sys-devel/gcc-10:=
!sci-biology/ncbi-tools++
!sci-biology/sra_sdk
berkdb? ( sys-libs/db:4.3[cxx] )
diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild
b/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild
index 0a826b779..641b37467 100644
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -28,13 +28,14 @@ IUSE="
berkdb boost bzip2 cppunit curl expat fltk freetype gif
glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python
sablotron sqlite tiff xerces xalan xml xpm xslt X"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 ~x86"
#KEYWORDS=""
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
# sys-libs/db should be compiled with USE=cxx
DEPEND="
+ <sys-devel/gcc-10:=
!sci-biology/ncbi-tools++
!sci-biology/sra_sdk
berkdb? ( sys-libs/db:4.3[cxx] )
diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild
b/sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild
index ca3e682ac..466101138 100644
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -28,13 +28,14 @@ IUSE="
berkdb boost bzip2 cppunit curl expat fltk freetype gif
glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python
sablotron sqlite tiff xerces xalan xml xpm xslt X"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 ~x86"
#KEYWORDS=""
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
# sys-libs/db should be compiled with USE=cxx
DEPEND="
+ <sys-devel/gcc-10:=
!sci-biology/ncbi-tools++
!sci-biology/sra_sdk
berkdb? ( sys-libs/db:4.3[cxx] )
