commit: 988c1cfb216762a1c2ff9dfacc570ce27003324d
Author: Jauhien Piatlicki <jauhien <AT> gentoo <DOT> org>
AuthorDate: Fri Sep 5 15:20:01 2014 +0000
Commit: Jauhien Piatlicki <jauhien <AT> gentoo <DOT> org>
CommitDate: Fri Sep 5 15:20:01 2014 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=988c1cfb
sci-biology/VarScan: add Non-profit-OSL-3.0 license and metadata.xml
---
licenses/Non-profit-OSL-3.0 | 63 ++++++++++++++++++++++++++++++++++++++++
sci-biology/VarScan/metadata.xml | 5 ++++
2 files changed, 68 insertions(+)
diff --git a/licenses/Non-profit-OSL-3.0 b/licenses/Non-profit-OSL-3.0
new file mode 100644
index 0000000..250f786
--- /dev/null
+++ b/licenses/Non-profit-OSL-3.0
@@ -0,0 +1,63 @@
+
+The Non-Profit Open Software License version 3.0 (NPOSL-3.0)
+[OSI Approved License]
+
+Non-Profit Open Software License 3.0 (NPOSL-3.0)
+
+This Non-Profit Open Software License ("Non-Profit OSL") version 3.0 (the
"License") applies to any original work of authorship (the "Original Work")
whose owner (the "Licensor") has placed the following licensing notice adjacent
to the copyright notice for the Original Work:
+
+Licensed under the Non-Profit Open Software License version 3.0
+
+1) Grant of Copyright License. Licensor grants You a worldwide, royalty-free,
non-exclusive, sublicensable license, for the duration of the copyright, to do
the following:
+
+a) to reproduce the Original Work in copies, either alone or as part of a
collective work;
+
+b) to translate, adapt, alter, transform, modify, or arrange the Original
Work, thereby creating derivative works ("Derivative Works") based upon the
Original Work;
+
+c) to distribute or communicate copies of the Original Work and Derivative
Works to the public, with the proviso that copies of Original Work or
Derivative Works that You distribute or communicate shall be licensed under
this Non-Profit Open Software License or as provided in section 17(d);
+
+d) to perform the Original Work publicly; and
+
+e) to display the Original Work publicly.
+
+2) Grant of Patent License. Licensor grants You a worldwide, royalty-free,
non-exclusive, sublicensable license, under patent claims owned or controlled
by the Licensor that are embodied in the Original Work as furnished by the
Licensor, for the duration of the patents, to make, use, sell, offer for sale,
have made, and import the Original Work and Derivative Works.
+
+3) Grant of Source Code License. The term "Source Code" means the preferred
form of the Original Work for making modifications to it and all available
documentation describing how to modify the Original Work. Licensor agrees to
provide a machine-readable copy of the Source Code of the Original Work along
with each copy of the Original Work that Licensor distributes. Licensor
reserves the right to satisfy this obligation by placing a machine-readable
copy of the Source Code in an information repository reasonably calculated to
permit inexpensive and convenient access by You for as long as Licensor
continues to distribute the Original Work.
+
+4) Exclusions From License Grant. Neither the names of Licensor, nor the names
of any contributors to the Original Work, nor any of their trademarks or
service marks, may be used to endorse or promote products derived from this
Original Work without express prior permission of the Licensor. Except as
expressly stated herein, nothing in this License grants any license to
Licensor's trademarks, copyrights, patents, trade secrets or any other
intellectual property. No patent license is granted to make, use, sell, offer
for sale, have made, or import embodiments of any patent claims other than the
licensed claims defined in Section 2. No license is granted to the trademarks
of Licensor even if such marks are included in the Original Work. Nothing in
this License shall be interpreted to prohibit Licensor from licensing under
terms different from this License any Original Work that Licensor otherwise
would have a right to license.
+
+5) External Deployment. The term "External Deployment" means the use,
distribution, or communication of the Original Work or Derivative Works in any
way such that the Original Work or Derivative Works may be used by anyone other
than You, whether those works are distributed or communicated to those persons
or made available as an application intended for use over a network. As an
express condition for the grants of license hereunder, You must treat any
External Deployment by You of the Original Work or a Derivative Work as a
distribution under section 1(c).
+
+6) Attribution Rights. You must retain, in the Source Code of any Derivative
Works that You create, all copyright, patent, or trademark notices from the
Source Code of the Original Work, as well as any notices of licensing and any
descriptive text identified therein as an "Attribution Notice." You must cause
the Source Code for any Derivative Works that You create to carry a prominent
Attribution Notice reasonably calculated to inform recipients that You have
modified the Original Work.
+
+7) Warranty of Provenance and Disclaimer of Warranty. The Original Work is
provided under this License on an "AS IS" BASIS and WITHOUT WARRANTY, either
express or implied, including, without limitation, the warranties of
non-infringement, merchantability or fitness for a particular purpose. THE
ENTIRE RISK AS TO THE QUALITY OF THE ORIGINAL WORK IS WITH YOU. This DISCLAIMER
OF WARRANTY constitutes an essential part of this License. No license to the
Original Work is granted by this License except under this disclaimer.
+
+8) Limitation of Liability. Under no circumstances and under no legal theory,
whether in tort (including negligence), contract, or otherwise, shall the
Licensor be liable to anyone for any direct, indirect, special, incidental, or
consequential damages of any character arising as a result of this License or
the use of the Original Work including, without limitation, damages for loss of
goodwill, work stoppage, computer failure or malfunction, or any and all other
commercial damages or losses. This limitation of liability shall not apply to
the extent applicable law prohibits such limitation.
+
+9) Acceptance and Termination. If, at any time, You expressly assented to this
License, that assent indicates your clear and irrevocable acceptance of this
License and all of its terms and conditions. If You distribute or communicate
copies of the Original Work or a Derivative Work, You must make a reasonable
effort under the circumstances to obtain the express assent of recipients to
the terms of this License. This License conditions your rights to undertake the
activities listed in Section 1, including your right to create Derivative Works
based upon the Original Work, and doing so without honoring these terms and
conditions is prohibited by copyright law and international treaty. Nothing in
this License is intended to affect copyright exceptions and limitations
(including "fair use" or "fair dealing"). This License shall terminate
immediately and You may no longer exercise any of the rights granted to You by
this License upon your failure to honor the conditions in Section 1(c).
+
+10) Termination for Patent Action. This License shall terminate automatically
and You may no longer exercise any of the rights granted to You by this License
as of the date You commence an action, including a cross-claim or counterclaim,
against Licensor or any licensee alleging that the Original Work infringes a
patent. This termination provision shall not apply for an action alleging
patent infringement by combinations of the Original Work with other software or
hardware.
+
+11) Jurisdiction, Venue and Governing Law. Any action or suit relating to this
License may be brought only in the courts of a jurisdiction wherein the
Licensor resides or in which Licensor conducts its primary business, and under
the laws of that jurisdiction excluding its conflict-of-law provisions. The
application of the United Nations Convention on Contracts for the International
Sale of Goods is expressly excluded. Any use of the Original Work outside the
scope of this License or after its termination shall be subject to the
requirements and penalties of copyright or patent law in the appropriate
jurisdiction. This section shall survive the termination of this License.
+
+12) Attorneys' Fees. In any action to enforce the terms of this License or
seeking damages relating thereto, the prevailing party shall be entitled to
recover its costs and expenses, including, without limitation, reasonable
attorneys' fees and costs incurred in connection with such action, including
any appeal of such action. This section shall survive the termination of this
License.
+
+13) Miscellaneous. If any provision of this License is held to be
unenforceable, such provision shall be reformed only to the extent necessary to
make it enforceable.
+
+14) Definition of "You" in This License. "You" throughout this License,
whether in upper or lower case, means an individual or a legal entity
exercising rights under, and complying with all of the terms of, this License.
For legal entities, "You" includes any entity that controls, is controlled by,
or is under common control with you. For purposes of this definition, "control"
means (i) the power, direct or indirect, to cause the direction or management
of such entity, whether by contract or otherwise, or (ii) ownership of fifty
percent (50%) or more of the outstanding shares, or (iii) beneficial ownership
of such entity.
+
+15) Right to Use. You may use the Original Work in all ways not otherwise
restricted or conditioned by this License or by law, and Licensor promises not
to interfere with or be responsible for such uses by You.
+
+16) Modification of This License. This License is Copyright © 2005 Lawrence
Rosen. Permission is granted to copy, distribute, or communicate this License
without modification. Nothing in this License permits You to modify this
License as applied to the Original Work or to Derivative Works. However, You
may modify the text of this License and copy, distribute or communicate your
modified version (the "Modified License") and apply it to other original works
of authorship subject to the following conditions: (i) You may not indicate in
any way that your Modified License is the "Open Software License" or "OSL" and
you may not use those names in the name of your Modified License; (ii) You must
replace the notice specified in the first paragraph above with the notice
"Licensed under <insert your license name here>" or with a notice of your own
that is not confusingly similar to the notice in this License; and (iii) You
may not claim that your original works are open source software unles
s your Modified License has been approved by Open Source Initiative (OSI) and
You comply with its license review and certification process.
+
+17) Non-Profit Amendment. The name of this amended version of the Open
Software License ("OSL 3.0") is "Non-Profit Open Software License 3.0". The
original OSL 3.0 license has been amended as follows:
+
+(a) Licensor represents and declares that it is a not-for-profit organization
that derives no revenue whatsoever from the distribution of the Original Work
or Derivative Works thereof, or from support or services relating thereto.
+
+(b) The first sentence of Section 7 ["Warranty of Provenance"] of OSL 3.0 has
been stricken. For Original Works licensed under this Non-Profit OSL 3.0,
LICENSOR OFFERS NO WARRANTIES WHATSOEVER.
+
+(c) In the first sentence of Section 8 ["Limitation of Liability"] of this
Non-Profit OSL 3.0, the list of damages for which LIABILITY IS LIMITED now
includes "direct" damages.
+
+(d) The proviso in Section 1(c) of this License now refers to this "Non-Profit
Open Software License" rather than the "Open Software License". You may
distribute or communicate the Original Work or Derivative Works thereof under
this Non-Profit OSL 3.0 license only if You make the representation and
declaration in paragraph (a) of this Section 17. Otherwise, You shall
distribute or communicate the Original Work or Derivative Works thereof only
under the OSL 3.0 license and You shall publish clear licensing notices so
stating. Also by way of clarification, this License does not authorize You to
distribute or communicate works under this Non-Profit OSL 3.0 if You received
them under the original OSL 3.0 license.
+
+(e) Original Works licensed under this license shall reference "Non-Profit OSL
3.0" in licensing notices to distinguish them from works licensed under the
original OSL 3.0 license.
diff --git a/sci-biology/VarScan/metadata.xml b/sci-biology/VarScan/metadata.xml
new file mode 100644
index 0000000..b229aec
--- /dev/null
+++ b/sci-biology/VarScan/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
+<pkgmetadata>
+<herd>sci</herd>
+</pkgmetadata>
