commit: 135c9b37558224c81bdec906c505df3e62d0b608 Author: Horea Christian <chr <AT> chymera <DOT> eu> AuthorDate: Mon Nov 25 17:54:53 2019 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Mon Nov 25 17:54:53 2019 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=135c9b37
sci-biology/ants: version bump 2.3.1_p20191013 Package-Manager: Portage-2.3.79, Repoman-2.3.18 Signed-off-by: Horea Christian <chr <AT> chymera.eu> sci-biology/ants/ants-2.3.1_p20191013.ebuild | 72 ++++++++++++++++++++++++++++ sci-biology/ants/metadata.xml | 5 +- 2 files changed, 76 insertions(+), 1 deletion(-) diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild new file mode 100644 index 000000000..5dd2c8145 --- /dev/null +++ b/sci-biology/ants/ants-2.3.1_p20191013.ebuild @@ -0,0 +1,72 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +CMAKE_MAKEFILE_GENERATOR="emake" + +inherit cmake-utils git-r3 multilib + +DESCRIPTION="Advanced Normalitazion Tools for neuroimaging" +HOMEPAGE="http://stnava.github.io/ANTs/"; +SRC_URI=" + test? ( + http://chymera.eu/distfiles/ants_testdata-${PV}.tar.xz + ) +" +EGIT_REPO_URI="https://github.com/stnava/ANTs.git"; +EGIT_COMMIT="f78b2d4a382d3090230641b5ade5da28962dad04" + +SLOT="0" +LICENSE="BSD" +KEYWORDS="~amd64 ~x86" +IUSE="test vtk" + +DEPEND=" + vtk? ( + ~sci-libs/itk-5.0.1[vtkglue] + sci-libs/vtk + ) + !vtk? ( ~sci-libs/itk-5.0.1 ) +" +RDEPEND="${DEPEND}" + +PATCHES=( + "${FILESDIR}/${P}-logic.patch" + "${FILESDIR}/${P}-paths.patch" +) + +src_unpack() { + git-r3_src_unpack + if use test; then + mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory." + tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data." + fi +} + +src_configure() { + local mycmakeargs=( + -DUSE_SYSTEM_ITK=ON + -DITK_DIR="/usr/include/ITK-5.0/" + -DBUILD_TESTING="$(usex test ON OFF)" + -DUSE_VTK=$(usex vtk ON OFF) + -DUSE_SYSTEM_VTK=$(usex vtk ON OFF) + ) + use vtk && mycmakeargs+=( + -DVTK_DIR="/usr/include/vtk-8.1/" + ) + use test && mycmakeargs+=( + -DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5" + ) + cmake-utils_src_configure +} + +src_install() { + BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build" + cmake-utils_src_install + cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found" + dobin *.sh + dodir /usr/$(get_libdir)/ants + install -t "${D}"/usr/$(get_libdir)/ants * || die + doenvd "${FILESDIR}"/99ants +} diff --git a/sci-biology/ants/metadata.xml b/sci-biology/ants/metadata.xml index 6d6b0d88a..87d2feb05 100644 --- a/sci-biology/ants/metadata.xml +++ b/sci-biology/ants/metadata.xml @@ -2,7 +2,7 @@ <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> <pkgmetadata> <maintainer type="person"> - <email>[email protected]</email> + <email>[email protected]</email> <name>Horea Christian</name> </maintainer> <maintainer type="project"> @@ -18,4 +18,7 @@ image analysis. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute. </longdescription> + <use> + <flag name="vtk">Optional support for a number of surface enabled tools (via sci-libs/vtk).</flag> + </use> </pkgmetadata>
