commit: 669fb165704ebae28b3781a18aa215d6f07c8340 Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org> AuthorDate: Wed Oct 30 08:03:26 2019 +0000 Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org> CommitDate: Wed Oct 30 08:03:26 2019 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=669fb165
sci-chemistry/relion: Add relion Package-Manager: Portage-2.3.78, Repoman-2.3.17 Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org> sci-chemistry/relion/metadata.xml | 16 ++++++++++++ sci-chemistry/relion/relion-3.0.8.ebuild | 45 ++++++++++++++++++++++++++++++++ 2 files changed, 61 insertions(+) diff --git a/sci-chemistry/relion/metadata.xml b/sci-chemistry/relion/metadata.xml new file mode 100644 index 000000000..8fe354309 --- /dev/null +++ b/sci-chemistry/relion/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Chemistry Project</name> + </maintainer> + <maintainer type="person"> + <email>[email protected]</email> + <name>Alexey Shvetsov</name> + </maintainer> + <use> + <flag name="gui">Enable relion gui</flag> + <flag name="cuda">Enable CUDA support</flag> + </use> +</pkgmetadata> diff --git a/sci-chemistry/relion/relion-3.0.8.ebuild b/sci-chemistry/relion/relion-3.0.8.ebuild new file mode 100644 index 000000000..34b1277a7 --- /dev/null +++ b/sci-chemistry/relion/relion-3.0.8.ebuild @@ -0,0 +1,45 @@ +# Copyright 2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit cmake-utils + +DESCRIPTION="Image-processing software for cryo-electron microscopy" +HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/relion"; +SRC_URI="https://github.com/3dem/relion/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="+gui cuda" + +DEPEND=" + gui? ( x11-libs/fltk ) + dev-cpp/tbb + sci-libs/fftw:3.0 + media-libs/tiff + virtual/mpi + cuda? ( dev-util/nvidia-cuda-toolkit ) + " +RDEPEND="${DEPEND}" +BDEPEND="${DEPEND}" + +src_prepare() { + # hack build type =D + sed 's:release:gentoo:g' -i CMakeLists.txt + cmake-utils_src_prepare +} + +src_configure() { + mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DALTCPU=ON + -DFORCE_OWN_FFTW=OFF + -DFORCE_OWN_FLTK=OFF + -DFORCE_OWN_TBB=OFF + -DCUDA=$(usex cuda) + -DGUI=$(usex gui) + ) + cmake-utils_src_configure +}
