commit: a2a4f4884319c4ce9b539716ed17951c4abcd3d4 Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de> AuthorDate: Mon Jul 21 15:06:10 2014 +0000 Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org> CommitDate: Mon Jul 21 15:06:10 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a2a4f488
Merge https://github.com/gentoo-science/sci app-doc/root-docs/ChangeLog | 25 ++ app-doc/root-docs/Manifest | 2 + ...html.patch => root-docs-5.34.01-makehtml.patch} | 30 +- .../files/root-docs-6.00.01-cernbuild.patch | 16 - .../files/root-docs-6.00.01-fillpatterns.patch | 30 ++ .../files/root-docs-6.00.01-makehtml.patch | 4 +- ...-6.00.01.ebuild => root-docs-5.34.18-r2.ebuild} | 7 +- ...-6.00.01.ebuild => root-docs-6.00.01-r1.ebuild} | 2 +- app-doc/root-docs/root-docs-6.00.02.ebuild | 1 + app-doc/root-docs/root-docs-9999.ebuild | 2 +- dev-lang/julia/ChangeLog | 2 +- dev-lang/julia/julia-9999.ebuild | 18 +- dev-python/ffc/ChangeLog | 17 +- dev-python/ffc/Manifest | 2 + dev-python/ffc/ffc-1.3.0.ebuild | 26 ++ dev-python/ffc/ffc-1.4.0.ebuild | 26 ++ dev-python/fiat/ChangeLog | 14 +- dev-python/fiat/Manifest | 2 + dev-python/fiat/fiat-1.3.0.ebuild | 24 ++ dev-python/fiat/fiat-1.4.0.ebuild | 24 ++ dev-python/instant/ChangeLog | 10 +- dev-python/instant/Manifest | 2 + dev-python/instant/instant-1.3.0.ebuild | 21 + dev-python/instant/instant-1.4.0.ebuild | 21 + dev-python/ufl/ChangeLog | 10 +- dev-python/ufl/Manifest | 4 +- dev-python/ufl/metadata.xml | 3 + dev-python/ufl/ufl-1.3.0.ebuild | 23 ++ dev-python/ufl/ufl-1.4.0.ebuild | 23 ++ dev-util/nvidia-cuda-sdk/ChangeLog | 9 + dev-util/nvidia-cuda-sdk/Manifest | 1 + dev-util/nvidia-cuda-sdk/metadata.xml | 13 + .../nvidia-cuda-sdk/nvidia-cuda-sdk-6.5.11.ebuild | 151 +++++++ dev-util/nvidia-cuda-toolkit/ChangeLog | 9 + dev-util/nvidia-cuda-toolkit/Manifest | 2 + dev-util/nvidia-cuda-toolkit/files/cuda-config.in | 28 ++ dev-util/nvidia-cuda-toolkit/metadata.xml | 14 + .../nvidia-cuda-toolkit-6.5.11.ebuild | 152 +++++++ sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild | 26 ++ sci-biology/Atlas-Link/ChangeLog | 10 + sci-biology/Atlas-Link/Manifest | 1 + .../Atlas-Link}/metadata.xml | 0 sci-biology/MaSuRCA/MaSuRCA-2.1.0.ebuild | 3 +- sci-biology/caftools/ChangeLog | 7 +- sci-biology/caftools/caftools-2.0.2.ebuild | 2 +- sci-biology/clview/ChangeLog | 6 + sci-biology/clview/Manifest | 4 +- sci-biology/clview/clview-0.1.ebuild | 2 +- sci-biology/emboss/ChangeLog | 6 + sci-biology/emboss/emboss-6.3.1_p4-r2.ebuild | 1 + ...mboss-6.3.1_p4-r2_rename_plwid_to_plwidth.patch | 13 + sci-biology/gap2caf/ChangeLog | 7 +- sci-biology/gap2caf/gap2caf-2.1.0.ebuild | 1 + sci-biology/jellyfish/ChangeLog | 9 + sci-biology/jellyfish/Manifest | 2 + sci-biology/jellyfish/jellyfish-2.1.3.ebuild | 18 + .../jellyfish}/metadata.xml | 0 sci-biology/tablet-bin/ChangeLog | 6 + sci-biology/tablet-bin/Manifest | 1 + .../tablet-bin-1.14.04.10.ebuild} | 11 +- sci-biology/tablet/ChangeLog | 8 + sci-biology/tablet/Manifest | 2 - sci-biology/tablet/tablet-1.13.12.17.ebuild | 85 ++-- sci-biology/tablet/tablet-1.14.04.10.ebuild | 51 +++ sci-biology/tablet/tablet-9999.ebuild | 77 +--- sci-chemistry/cpmgfit/ChangeLog | 10 + sci-chemistry/cpmgfit/Manifest | 1 + sci-chemistry/cpmgfit/cpmgfit-1.43.ebuild | 49 +++ sci-chemistry/{burrow-owl => cpmgfit}/metadata.xml | 0 sci-chemistry/direx/ChangeLog | 16 - sci-chemistry/direx/Manifest | 1 - sci-chemistry/direx/direx-0.2.ebuild | 42 -- sci-chemistry/direx/metadata.xml | 5 - sci-chemistry/gromacs/ChangeLog | 4 + sci-chemistry/gromacs/gromacs-4.6.9999.ebuild | 25 +- sci-chemistry/gromacs/gromacs-5.0.9999.ebuild | 7 +- sci-chemistry/hydronmr/ChangeLog | 3 + sci-chemistry/hydronmr/hydronmr-7c.ebuild | 3 - sci-chemistry/nmrpipe/ChangeLog | 10 +- .../nmrpipe/nmrpipe-8.1.2013.218.23.09-r1.ebuild | 11 +- sci-chemistry/unio/ChangeLog | 3 + sci-chemistry/unio/unio-2.0.3-r1.ebuild | 6 +- sci-libs/cblas-reference/ChangeLog | 4 + .../cblas-reference-20110218.ebuild | 2 +- sci-libs/fftw/ChangeLog | 3 + sci-libs/fftw/fftw-9999.ebuild | 5 +- sci-libs/gsl/ChangeLog | 6 +- sci-libs/gsl/gsl-1.16-r1.ebuild | 2 +- sci-libs/libcerf/ChangeLog | 13 + sci-libs/libcerf/Manifest | 1 + sci-libs/libcerf/files/libcerf-1.3-autotools.patch | 48 +++ sci-libs/libcerf/libcerf-1.3.ebuild | 22 ++ .../neovim => sci-libs/libcerf}/metadata.xml | 0 .../files/scilab-5.5.0-accessviolation.patch | 32 +- sci-mathematics/scilab/scilab-5.5.0.ebuild | 4 + sci-mathematics/ufc/ChangeLog | 10 +- sci-mathematics/ufc/Manifest | 3 +- sci-mathematics/ufc/ufc-2.3.0.ebuild | 19 + sci-physics/abinit/ChangeLog | 5 + .../abinit/files/7.6.3-libabinit_options.patch | 80 ++++ sci-physics/espresso++/ChangeLog | 3 + sci-physics/espresso++/espresso++-9999.ebuild | 1 + sci-physics/geant-vmc/ChangeLog | 8 + sci-physics/geant-vmc/geant-vmc-9999.ebuild | 79 ++++ sci-physics/geant-vmc/metadata.xml | 3 + sci-physics/root/ChangeLog | 38 ++ sci-physics/root/Manifest | 2 + sci-physics/root/files/root-5.32.00-dotfont.patch | 58 +++ .../root/files/root-5.32.00-prop-flags.patch | 15 + .../root/files/root-5.34.05-nobyte-compile.patch | 137 +++++++ .../root/files/root-5.34.18-tutorials-path.patch | 94 +++++ sci-physics/root/files/root-6.00.01-cling.patch | 19 + .../root/files/root-6.00.01-tutorials-path.patch | 39 ++ sci-physics/root/metadata.xml | 2 + ...{root-6.00.01.ebuild => root-5.34.18-r2.ebuild} | 173 +++----- ...{root-6.00.01.ebuild => root-6.00.01-r1.ebuild} | 18 +- .../{root-6.00.01.ebuild => root-6.00.02.ebuild} | 17 +- sci-physics/root/root-9999.ebuild | 439 ++++++++++++++++++++- sci-physics/vgm/ChangeLog | 10 + sci-physics/vgm/vgm-3.06.ebuild | 2 +- .../vgm/{vgm-3.06.ebuild => vgm-9999.ebuild} | 33 +- sci-visualization/gnuplot/ChangeLog | 9 + ...lot-4.7.9999.ebuild => gnuplot-5.0.9999.ebuild} | 1 + 123 files changed, 2319 insertions(+), 465 deletions(-)
